ViewGene
Locus Name:
GeneID:
Location:

GeneID:2042
TrivialName: PA14_25550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25550
PAO1 Ortholog Locus:PA2977
Sequence Length:1020
Protein Length:339
Start: 2232097
Stop: 2233116
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06365.1|AE004723_9 (AE004723) UDP-N-acetylpyruvoylglucosamine reductase [Pseudomonas aeruginosa PAO1]
Identities = 337/339 (99%), Positives = 338/339 (99%)
Sequence:
GTGAGCCTGGAACTGCAAGAGCATTGCTCGCTGAAGCCCTATAACACCTTCGGCATCGACGTGCGCGCCCGC
CTGCTGGCCCACGCCCAGGACGAGGCTGATGTGCGCGAGGCCCTGGCCCTGGCTCGGGAGCGTGGATTGCCG
CTGCTGGTGATCGGTGGTGGCAGCAACCTGCTGCTGACCCGTGACGTCGAGGCGCTGGTATTGCGCATGGCC
AGCCAGGGGCGGCGAATTGTTTCCGATGCCGCGGATTCGGTGTTGGTCGAGGCGGAGGCGGGCGAGGCCTGG
GACCCATTCGTGCAATGGAGCCTGGAACGGGGCCTGGCCGGTCTGGAAAATCTCAGCCTGATTCCCGGCACC
GTGGGTGCGGCGCCGATGCAGAACATCGGCGCCTATGGCGTGGAGCTGAAGGACGTCTTCGACAGTCTGACG
GCGCTGGATCGCCAGGATGGAACCCTGCGTGAGTTCGACCGCCAGGCCTGCCGTTTCGGCTACCGCGACAGC
CTGTTCAAGCAGGAGCCTGATCGCTGGCTGATCCTCCGCGTGCGCCTGCGCCTGACACGGCGGGAGAGGCTG
CACCTGGACTACGGGCCGGTACGCCAGCGCCTGGAGGAGGAGGGCATCGCCAGTCCGACGGCCAGGGACGTA
AGCCGGGTAATCTGCGCCATTCGCCGGGAAAAGCTGCCCGACCCCGCCGTATTGGGCAATGCCGGCAGCTTC
TTCAAGAATCCGCTGGTGGATGCGGCGCAGGCCGAACGCTTGCGTCAGGCCTTCCCGGATCTGGTCGGCTAT
CCGCAGGCGGACGGTCGGCTGAAGCTGGCTGCAGGCTGGCTCATCGACAAGGGTGGCTGGAAGGGTTTCCGC
GATGGCCCGGTGGGGGTACACGCGCAGCAGGCGCTGGTCCTGGTCAACCATGGCGGCGCCACTGGTGCCCAG
GTCCGGGCATTGGCCGAGCGTATCCAGGAGGACGTCCGTCGGCGTTTCGGCGTCGAATTGGAGCCTGAACCC
AATCTCTACTGA
Translation:
MSLELQEHCSLKPYNTFGIDVRARLLAHAQDEADVREALALARERGLPLLVIGGGSNLLLTRDVEALVLRMA
SQGRRIVSDAADSVLVEAEAGEAWDPFVQWSLERGLAGLENLSLIPGTVGAAPMQNIGAYGVELKDVFDSLT
ALDRQDGTLREFDRQACRFGYRDSLFKQEPDRWLILRVRLRLTRRERLHLDYGPVRQRLEEEGIASPTARDV
SRVICAIRREKLPDPAVLGNAGSFFKNPLVDAAQAERLRQAFPDLVGYPQADGRLKLAAGWLIDKGGWKGFR
DGPVGVHAQQALVLVNHGGATGAQVRALAERIQEDVRRRFGVELEPEPNLY*
AnnotationID:2050GeneID:2042
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 07:07:58
Gene Name:murB
Confidence Code:2
GeneProduct:UDP-N-acetylpyruvoylglucosamine reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0812
Secondary Functional Category(ies):
EC Number:1.1.1.158
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67523.1|AE016380_11 (AE016781) UDP-N-acetylenolpyruvoylglucosamine reductase
           [Pseudomonas putida KT2440]
          Length = 351

 Score =  466 bits (1199), Expect = e-131
 Identities = 227/339 (66%), Positives = 271/339 (79%)

>gb|AAO57309.1| (AE016869) UDP-N-acetylenolpyruvoylglucosamine reductase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 339

 Score =  457 bits (1175), Expect = e-128
 Identities = 231/339 (68%), Positives = 270/339 (79%)

>emb|CAE38781.1| (BX640433) UDP-N-acetylenolpyruvoylglucosamine reductase
           [Bordetella parapertussis]
          Length = 353

 Score =  313 bits (801), Expect = 1e-84
 Identities = 177/327 (54%), Positives = 212/327 (64%), Gaps = 3/327 (0%)








 
Structural Features:
COG0812, MurB, UDP-N-acetylmuramate dehydrogenase 
[Cell envelope biogenesis, outer membrane]






   
Genomic Context:






   
Comment:


















    ReferenceID:14489




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21233




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36075




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:2042_cdd.html


    		




 
URL:

















    ReferenceID:36448




  
Author/Investigator(s):
        Pucci MJ, Discotto LF, Dougherty TJ.





  
Title:
        Cloning and identification of the Escherichia coli murB DNA sequence, which encodes UDP-N-acetylenolpyruvoylglucosamine reductase.




  
PubMed:
        1311302


MedLine:
        




    
Source:
J Bacteriol. 1992 Mar;174(5):1690-3.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1311302









           
Homologs By Global Alignment 

           

       



     
Gene ID:2042
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3537
                           PA2977_tr
                           translation of PA2977
                           339
                           99.41
                           99.70
                           0
                           1726.0
     

     
     
109199
                           gb|AAG06365.1|AE004723_9
                           (AE004723) UDP-N-acetylpyruvoylglucosamine reductase [Pseudomonas aeruginosa PAO1]
                           339
                           99.11
                           99.70
                           0
                           1723.0
     

     
     
109201
                           gb|AAO57309.1|
                           (AE016869) UDP-N-acetylenolpyruvoylglucosamine reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           339
                           67.84
                           79.64
                           0
                           1171.0
     

     
     
109200
                           gb|AAN67523.1|AE016380_11
                           (AE016781) UDP-N-acetylenolpyruvoylglucosamine reductase [Pseudomonas putida KT2440]
                           351
                           64.38
                           77.20
                           12
                           1195.0
     

     
     
109202
                           gb|AAQ59268.1|
                           (AE016915) UDP-N-acetylmuramate dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           342
                           55.26
                           70.17
                           4
                           910.0
     

     






      

          
GC ORFID: 45044How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2977Glimmer Score: 

          
Start: 2721828Stop: 2720809

          
Length: 1020


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2977 translation of PA2977Homolog Bit Score 669.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2180 (ORF: BLASTX 457.0), t_PA2977 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCTGGAACTGCAAGAGCATTGCTCGCTGAAGCCCTATAACACCTTCGGCATCGACGTGCGCGCCCGC 
CTGCTGGCCCACGCCCAGGACGAGGCTGATGTGCGCGAGGCCCTGGCCCTGGCTCGGGAGCGTGGATTGCCG 
CTGCTGGTGATCGGTGGTGGCAGCAACCTGCTGCTGACCCGTGACGTCGAGGCGCTGGTATTGCGCATGGCC 
AGCCAGGGGCGGCGAATTGTTTCCGATGCCGCGGATTCGGTGTTGGTCGAGGCGGAGGCGGGCGAGGCCTGG 
GACCCATTCGTGCAATGGAGCCTGGAACGGGGCCTGGCCGGTCTGGAAAATCTCAGCCTGATTCCCGGCACC 
GTGGGTGCGGCGCCGATGCAGAACATCGGCGCCTATGGCGTGGAGCTGAAGGACGTCTTCGACAGTCTGACG 
GCGCTGGATCGCCAGGATGGAACCCTGCGTGAGTTCGACCGCCAGGCCTGCCGTTTCGGCTACCGCGACAGC 
CTGTTCAAGCAGGAGCCTGATCGCTGGCTGATCCTCCGCGTGCGCCTGCGCCTGACACGGCGGGAGAGGCTG 
CACCTGGACTACGGGCCGGTACGCCAGCGCCTGGAGGAGGAGGGCATCGCCAGTCCGACGGCCAGGGACGTA 
AGCCGGGTAATCTGCGCCATTCGCCGGGAAAAGCTGCCCGACCCCGCCGTATTGGGCAATGCCGGCAGCTTC 
TTCAAGAATCCGCTGGTGGATGCGGCGCAGGCCGAACGCTTGCGTCAGGCCTTCCCGGATCTGGTCGGCTAT 
CCGCAGGCGGACGGTCGGCTGAAGCTGGCTGCAGGCTGGCTCATCGACAAGGGTGGCTGGAAGGGTTTCCGC 
GATGGCCCGGTGGGGGTACACGCGCAGCAGGCGCTGGTCCTGGTCAACCATGGCGGCGCCACTGGTGCCCAG 
GTCCGGGCATTGGCCGAGCGTATCCAGGAGGACGTCCGTCGGCGTTTCGGCGTCGAATTGGAGCCTGAACCC 
AATCTCTACTGA