ViewGene
Locus Name:
GeneID:
Location:

GeneID:2041
TrivialName: PA14_42990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42990
PAO1 Ortholog Locus:PA1661
Sequence Length:1008
Protein Length:335
Start: 3825078
Stop: 3824071
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05050.1|AE004594_2 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/335 (99%), Positives = 334/335 (99%)
Sequence:
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTG
TTCCAGGCGGTCCTGCTGGTCATGGATCGCCTGCGCGAGGAACATCCCGGCCTGGGAGACGAAGCGCTCTAC
GATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTC
GAAGAGCGCGGCATGCTGCGGGCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTG
CCGGCGTTCTACAGCGAGCAGGCCCTGGGCGACAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTC
TTCCATCACCGCCTGCATCGGCTGCTATTGCCGATCTGGCGCAAGTACCGCTACCGGGTGAGCTTCCAGAGC
GGCGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAAGGCC
AGGGAACTGAACTGGAAACGTCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGCGCACTCGGCGGCCTTG
ATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATAGAACGGCGCGTC
GCGATCCTCGAAGAGCAGCGCAACCGACTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAG
TTCCTGCCGATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTCCGCTTCACCCTGCGCGACCCGCTCGAC
TACGACATCCGGCTGGTCTTGCGCCAGGAGGAAATCCGCGAGTTCCGCATCGGCGCTCAGAACGCCTGCCGC
CTTGGCTGGACCAGTTGGCTGGGCCGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA
Translation:
METAHGFAAPAVSALARGIREYSLFQAVLLVMDRLREEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFF
EERGMLRARLRFNLIGLFGASSPLPAFYSEQALGDSEEGNPTRNFLDLFHHRLHRLLLPIWRKYRYRVSFQS
GASDAFSAQLFALVGLGGEEIRKARELNWKRLLPYLGLLSLRAHSAALIESVLRYYFKHAELVAEQCIERRV
AILEEQRNRLGLFNSQLGEDAVLGERVRDRSGKFRIHIRQLDWQRFHEFLPIGPGYQPLCALVRFTLRDPLD
YDIRLVLRQEEIREFRIGAQNACRLGWTSWLGRERADGVVTLGSKIH*
AnnotationID:2049GeneID:2041
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 17:05:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1661
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4085




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37162




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2041_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2041
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3536
                           PA1661_tr
                           translation of PA1661
                           335
                           99.10
                           99.70
                           0
                           1726.0
     

     
     
109195
                           gb|AAG05050.1|AE004594_2
                           (AE004594) hypothetical protein PA1661 [Pseudomonas aeruginosa PAO1]
                           335
                           99.10
                           99.70
                           0
                           1726.0
     

     
     
109196
                           gb|AAO58848.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           83.28
                           90.14
                           0
                           1475.0
     

     
     
109197
                           gb|AAO56052.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           64.17
                           77.01
                           0
                           1134.0
     

     
     
109198
                           gb|AAF96025.1|
                           (AE004353) hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           346
                           39.01
                           55.78
                           19
                           573.0
     

     






      

          
GC ORFID: 45043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1661Glimmer Score: 

          
Start: 1128831Stop: 1129838

          
Length: 1008


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1661 translation of PA1661Homolog Bit Score 669.0

          
Other Homologs:  t_PA1661 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCGCGCATGGGTTTGCAGCCCCTGCTGTAAGCGCGCTGGCCCGGGGCATTCGCGAGTACTCGCTG 
TTCCAGGCGGTCCTGCTGGTCATGGATCGCCTGCGCGAGGAACATCCCGGCCTGGGAGACGAAGCGCTCTAC 
GATCAGTTGGAATTCCAGGCCAATCCTAGCCTCGGCTTCCCGGGCAGCGATGTCGATCGGGTGGAGTTCTTC 
GAAGAGCGCGGCATGCTGCGGGCGCGGCTGCGTTTCAACCTGATCGGCTTGTTCGGTGCCAGTTCGCCGTTG 
CCGGCGTTCTACAGCGAGCAGGCCCTGGGCGACAGCGAGGAGGGCAATCCTACGCGGAACTTCCTCGATCTC 
TTCCATCACCGCCTGCATCGGCTGCTATTGCCGATCTGGCGCAAGTACCGCTACCGGGTGAGCTTCCAGAGC 
GGCGCGAGCGATGCGTTCTCCGCTCAGTTGTTCGCCCTCGTCGGATTGGGCGGGGAAGAGATCCGCAAGGCC 
AGGGAACTGAACTGGAAACGTCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGGGCGCACTCGGCGGCCTTG 
ATCGAGTCGGTGCTGCGCTACTACTTCAAGCATGCCGAACTGGTCGCCGAGCAGTGTATAGAACGGCGCGTC 
GCGATCCTCGAAGAGCAGCGCAACCGACTCGGCCTGTTCAACAGCCAGCTTGGCGAAGACGCGGTGCTGGGC 
GAACGGGTCCGCGACCGCAGCGGCAAGTTCCGCATTCATATCCGCCAGCTCGACTGGCAGCGCTTCCACGAG 
TTCCTGCCGATCGGTCCCGGCTACCAGCCGCTTTGCGCGCTGGTCCGCTTCACCCTGCGCGACCCGCTCGAC 
TACGACATCCGGCTGGTCTTGCGCCAGGAGGAAATCCGCGAGTTCCGCATCGGCGCTCAGAACGCCTGCCGC 
CTTGGCTGGACCAGTTGGCTGGGCCGGGAGCGCGCCGATGGCGTGGTGACGCTGGGCAGCAAGATTCATTAA