ViewGene

Locus Name:
GeneID:
Location:

GeneID:2040
TrivialName: PA14_05180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05180
PAO1 Ortholog Locus:PA0395
Sequence Length:1035
Protein Length:344
Start: 451306
Stop: 452340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03784.1|AE004477_1 (AE004477) twitching motility protein PilT [Pseudomonas aeruginosa PAO1]
Identities = 344/344 (100%), Positives = 344/344 (100%)
Sequence:
ATGGATATTACCGAGCTGCTCGCCTTCAGTGCCAAACAGGGCGCTTCGGACCTGCACCTCTCCGCCGGCCTG
CCGCCCATGATCCGGGTGGATGGCGATGTACGCCGGATCAACCTGCCACCGCTGGAACACAAGCAGGTGCAT
GCGCTGATCTACGACATCATGAACGACAAGCAGCGCAAGGACTTCGAGGAATTCCTCGAGACCGACTTCTCC
TTCGAGGTGCCGGGCGTCGCGCGTTTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCGGTATTC
CGGACCATTCCCTCCAAGGTACTGACCATGGAGGAGCTTGGCATGGGAGAAGTGTTCAAACGTGTTTCAGAC
GTCCCGCGCGGGCTGGTACTGGTCACCGGGCCGACCGGTTCGGGCAAGTCCACCACCCTGGCGGCGATGCTC
GACTACCTGAACAACACCAAGTACCACCACATCCTCACCATCGAGGACCCGATCGAATTCGTCCACGAATCG
AAGAAGTGCCTGGTCAACCAGCGCGAGGTGCATCGCGACACCCTCGGCTTCAGCGAAGCGCTGCGCTCGGCG
CTGCGGGAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAAACCATCCGCCTGGCCCTGACC
GCGGCGGAGACCGGCCACCTGGTATTCGGCACCCTGCACACCACCTCGGCGGCGAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAAAAGGCCATGGTTCGCTCGATGCTCTCCGAGTCGCTGCAATCGGTGATC
TCGCAGACCCTGATCAAGAAGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCG
ATCCGCAACCTGATCCGCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCGGCTCGCTGGGC
ATGCAGACCCTCGACATGTGCCTCAAGGGCCTGGTCGCCAAGGGCCTGATCAGCCGCGAGAATGCCCGCGAG
AAGGCGAAGATCCCGGAAAACTTCTGA
Translation:
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFS
FEVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML
DYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALT
AAETGHLVFGTLHTTSAAKTIDRVVDVFPAEEKAMVRSMLSESLQSVISQTLIKKIGGGRVAAHEIMIGTPA
IRNLIREDKVAQMYSAIQTGGSLGMQTLDMCLKGLVAKGLISRENAREKAKIPENF*
AnnotationID:2048GeneID:2040
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 07:07:16
Gene Name:pilT
Confidence Code:1
GeneProduct:twitching motility protein PilT
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2805,cd01131
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAB56295.1| (AJ249385) twitching motility protein [Pseudomonas stutzeri]
          Length = 344

 Score =  644 bits (1660), Expect = 0.0
 Identities = 324/344 (94%), Positives = 341/344 (99%)

>gb|AAO58473.1| (AE016874) twitching motility protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 344

 Score =  605 bits (1560), Expect = e-172
 Identities = 300/344 (87%), Positives = 331/344 (96%)

>gb|AAM37769.1| (AE011934) twitching motility protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 345

 Score =  540 bits (1391), Expect = e-153
 Identities = 268/339 (79%), Positives = 305/339 (89%)
Structural Features:
COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 353 residues,  97.2% aligned
Score =  549 bits (1415), Expect = 2e-157
Identities = 232/343 (67%), Positives = 272/343 (79%), Gaps = 1/343 (0%)

cd01131, PilT, Pilus retraction ATPase PilT.
CD-Length = 198 residues, 100.0% aligned
Score =  329 bits (844), Expect = 3e-91
Genomic Context:
Comment:
ReferenceID:4083
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21229
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33731
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2040_cdd.html
URL:
ReferenceID:35381
Author/Investigator(s): Whitchurch CB, Hobbs M, Livingston SP, Krishnapillai V, Mattick JS.
Title: Characterisation of a Pseudomonas aeruginosa twitching motility gene and evidence for a specialised protein export system widespread in eubacteria.
PubMed: 1676385
MedLine:
Source:
Gene. 1991 May 15;101(1):33-44.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1676385
ReferenceID:35382
Author/Investigator(s): Sakai D, Komano T.
Title: Genes required for plasmid R64 thin-pilus biogenesis: identification and localization of products of the pilK, pilM, pilO, pilP, pilR, and pilT genes.
PubMed: 11751821
MedLine:
Source:
J Bacteriol. 2002 Jan;184(2):444-51.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11751821
Homologs By Global Alignment
Gene ID:2040

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3534 PA0395_tr translation of PA0395 344 99.99 99.99 0 1728.0
109094 gb|AAG03784.1|AE004477_1 (AE004477) twitching motility protein PilT [Pseudomonas aeruginosa PAO1] 344 99.99 99.99 0 1728.0
109095 gb|AAA25963.1| (M55524) twitching motility protein [Pseudomonas aeruginosa] 344 99.99 99.99 0 1728.0
109096 emb|CAB56295.1| (AJ249385) twitching motility protein [Pseudomonas stutzeri] 344 94.18 99.12 0 1660.0
109097 gb|AAG18590.1|AF297458_1 (AF297458) pilin biogenesis protein PilT [Pseudomonas fluorescens] 344 88.95 96.22 0 1577.0
GC ORFID: 45042How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0395Glimmer Score:
Start: 6252648Stop: 6253682
Length: 1035
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0395 translation of PA0395Homolog Bit Score 670.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3344 (ORF: BLASTX 612.0), t_PA0395 (ORF: GLIMMER)
GC ORF Sequence
ATGGATATTACCGAGCTGCTCGCCTTCAGTGCCAAACAGGGCGCTTCGGACCTGCACCTCTCCGCCGGCCTG
CCGCCCATGATCCGGGTGGATGGCGATGTACGCCGGATCAACCTGCCACCGCTGGAACACAAGCAGGTGCAT
GCGCTGATCTACGACATCATGAACGACAAGCAGCGCAAGGACTTCGAGGAATTCCTCGAGACCGACTTCTCC
TTCGAGGTGCCGGGCGTCGCGCGTTTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCGGTATTC
CGGACCATTCCCTCCAAGGTACTGACCATGGAGGAGCTTGGCATGGGAGAAGTGTTCAAACGTGTTTCAGAC
GTCCCGCGCGGGCTGGTACTGGTCACCGGGCCGACCGGTTCGGGCAAGTCCACCACCCTGGCGGCGATGCTC
GACTACCTGAACAACACCAAGTACCACCACATCCTCACCATCGAGGACCCGATCGAATTCGTCCACGAATCG
AAGAAGTGCCTGGTCAACCAGCGCGAGGTGCATCGCGACACCCTCGGCTTCAGCGAAGCGCTGCGCTCGGCG
CTGCGGGAGGACCCGGACATCATCCTGGTCGGCGAGATGCGCGACCTGGAAACCATCCGCCTGGCCCTGACC
GCGGCGGAGACCGGCCACCTGGTATTCGGCACCCTGCACACCACCTCGGCGGCGAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAAAAGGCCATGGTTCGCTCGATGCTCTCCGAGTCGCTGCAATCGGTGATC
TCGCAGACCCTGATCAAGAAGATCGGCGGCGGCCGGGTGGCGGCCCACGAGATCATGATCGGCACCCCGGCG
ATCCGCAACCTGATCCGCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCGGCTCGCTGGGC
ATGCAGACCCTCGACATGTGCCTCAAGGGCCTGGTCGCCAAGGGCCTGATCAGCCGCGAGAATGCCCGCGAG
AAGGCGAAGATCCCGGAAAACTTCTGA