ViewGene
Locus Name:
GeneID:
Location:

GeneID:204
TrivialName: PA14_24330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24330
PAO1 Ortholog Locus:PA3079
Sequence Length:2382
Protein Length:793
Start: 2113036
Stop: 2115417
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06467.1|AE004732_1 (AE004732) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 790/793 (99%), Positives = 793/793 (100%)
Sequence:
ATGAGTGCCATGAACCAGCATCAGCAAAACAAGGCGAGCCTGCTCGAACGCCTGATCTTCAACAACCGGCCG
GTGGTGATCTTCCTCTGCCTGCTGGTCAGCGTCTTCCTGTTCTACCAGGCCACCCAGGTGCGGCCGTCCACC
AGCTTCGAGAAGATGATCCCGCTGGAGCACCCGTTCATCCAGAAAATGCTCGAGCACCGCAACGACCTGGCC
AACCTCGGCAACACCGTGCGCATCTCGGTGGAGGCGGTGAACGGCGACATCTTCACCAAGGAGTACATGGAG
ACGCTCCGGCAGATCCATGACGAGGTGTTCTACATCCCCGGCGTCGACCGTTCCGGCCTGAAGTCGTTGTGG
AGCCCCAGCGTGCGCTGGACCGAAGTGACCGAGGAAGGCTTCGCCGGCGGCGAGGTGATCCCGCAGACCTAC
GACGGTTCGCCGCGGGCGCTGGAGGAACTGCGCAACAACGTGCTCAAGTCCGGGCAGATCGGCCGCCTGGTG
GCGAACAACTTCAAGTCGAGCATCGTCGACGTACCGCTGCTGGAGATGTACCCGAACCCGAAGAACCAGAGC
GAACTGATCAAGCTCGACTACCGCCAGTTCTCCCATGAGCTGGAAGAGAAGATCCGCGACAAGTACCAGTTG
CAGAATCCCAACGTGAAGGTGCACATCGTCGGCTTCGCGAAGAAGGTCGGCGACCTGATCGACGGGCTGGTG
ATGGTGGTCGGCTTCTTCGGTATCTGCCTGCTGATCACCCTGGTCCTGCTGTACTGGTTCACCAAGTGCATC
CGCAGCACCATCGCCGTGCTGATCACTACCCTGGTGGCGGTGCTCTGGCAGCTCGGCCTGCTCAACCTGGTC
GGTTTCGGCCTCGATCCCTATTCGATGCTGGTGCCGTTCCTGATCTTCGCCATCGGCATCTCCCACGGCGTG
CAGAAGATCAATGGCATCGCCTTGCAGTCCAGCGGCGCCGACAATGCGCTGATGGCGGCGCGGCTGACCTTC
CGCCAACTGTTCCTGCCCGGGATGATCGCGATCCTCGCCGACGCCGTCGGCTTCATCACCCTGCTGGTGATC
GACATCGGGGTGATCCGCGAGCTGGCCATCGGCGCCTCGATCGGCGTGGCGGTGATCGTCTTCACCAACCTG
ATCCTGCTGCCCGTGGCGATCTCCTACATCGGCATCAGCAAGAAGGCAGTGCAGCGCAGCAAGGACGACGCG
GTGCGCGAGCACCCGTTCTGGCGCCTGCTGTCGAACTTCGCCAGCCCGAAGGTGGCCCCGGTGTCCATCGCC
ATCGCCTTGCTGATGCTCGGCGGCGGCCTCTGGTATGGCAAGCACCTGAAGATCGGCGACCTCGACCAGGGC
GCGCCGGAACTGCGTCCCGACTCGCGCTACAACCTCGACAACGACTTCATCATCCGCAACTACTCGACCAGT
TCGGACGTGCTGGTGGTGATGGTCAAGACCACCCCGGAAGGCTGCTCCACCCACCAGGCCCTGGCGGCCATG
GACGAGCTGGCCTGGAAGCTGGAGAACACCGAGGGCGTGCAGTCGGCGATCTCGATGGTCACCGTGTCCAAG
CAGGTGATCAAGGGGATGAACGAAGGCAACCTGAAATGGGAGACCCTGTCGCGCAACCAGGACGTGCTGAAC
AACTCCATCGCCCGTGCCGACGGTCTCTACAACACCGACTGCTCGCTGGCGCCGCTGCTGGTCTTCCTCAAC
GACCACAAGGCCGAGACCCTCGACCGCGCGGTGGCGGCGGTGCAGGCCTTCGCCGCGGAGAATGACAAGGAC
GACCTGCAGTTCCAGCTGGCCGCCGGCAACGCCGGGATCGAGGCCGCCACCAACGAGGTGATCAAGCAGTCC
GAACTGATCATCCTGGTGCTGGTGTACATCTGCGTGGCGGCCATGTGCATGATCACCTTCCGTTCCTTCGCC
GCGACCCTCTGCATCGTCCTGCCGCTGATCCTCACCTCGGTGCTGGGCAACGCGCTGATGGCGGCGCTGGGC
ATCGGCGTGAAGGTCGCGACCCTGCCGGTGATCGCCCTCGGCGTCGGCATCGGGGTGGACTACGGGATCTAC
ATCTACACCCGCCTGGAGTCTTTCCTGCGCATGGGCCTGCCGTTGCAGGAGGCCTACTACGAGACCCTCCGC
TCCACCGGCAAGGCGGTGCTGTTCACCGGCCTGTGCCTGGCGATCGGCGTGGCCACCTGGATCTTCTCGGCG
ATCAAGTTCCAGGCCGACATGGGCCTGATGCTGACCTTCATGCTGCTCTGGAACATGTTCGGCGCCCTCTGG
CTGCTGCCGGCCCTGGCGCGTTTCCTGATCAACCCGGCCAAGCTGCAGGCCAGGAAGGCCTCGCTGTTCGCT
CACTGA
Translation:
MSAMNQHQQNKASLLERLIFNNRPVVIFLCLLVSVFLFYQATQVRPSTSFEKMIPLEHPFIQKMLEHRNDLA
NLGNTVRISVEAVNGDIFTKEYMETLRQIHDEVFYIPGVDRSGLKSLWSPSVRWTEVTEEGFAGGEVIPQTY
DGSPRALEELRNNVLKSGQIGRLVANNFKSSIVDVPLLEMYPNPKNQSELIKLDYRQFSHELEEKIRDKYQL
QNPNVKVHIVGFAKKVGDLIDGLVMVVGFFGICLLITLVLLYWFTKCIRSTIAVLITTLVAVLWQLGLLNLV
GFGLDPYSMLVPFLIFAIGISHGVQKINGIALQSSGADNALMAARLTFRQLFLPGMIAILADAVGFITLLVI
DIGVIRELAIGASIGVAVIVFTNLILLPVAISYIGISKKAVQRSKDDAVREHPFWRLLSNFASPKVAPVSIA
IALLMLGGGLWYGKHLKIGDLDQGAPELRPDSRYNLDNDFIIRNYSTSSDVLVVMVKTTPEGCSTHQALAAM
DELAWKLENTEGVQSAISMVTVSKQVIKGMNEGNLKWETLSRNQDVLNNSIARADGLYNTDCSLAPLLVFLN
DHKAETLDRAVAAVQAFAAENDKDDLQFQLAAGNAGIEAATNEVIKQSELIILVLVYICVAAMCMITFRSFA
ATLCIVLPLILTSVLGNALMAALGIGVKVATLPVIALGVGIGVDYGIYIYTRLESFLRMGLPLQEAYYETLR
STGKAVLFTGLCLAIGVATWIFSAIKFQADMGLMLTFMLLWNMFGALWLLPALARFLINPAKLQARKASLFA
H*
AnnotationID:214GeneID:204
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 16:04:15
Gene Name:
Confidence Code:3
GeneProduct:putative export protein
Cell Localization:()
Synonyms:PA3079
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1033
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57246.1| (AE016869) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 796

 Score = 1330 bits (3441), Expect = 0.0
 Identities = 668/788 (84%), Positives = 732/788 (92%), Gaps = 1/788 (0%)

>gb|AAN67633.1|AE016393_2 (AE016781) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 799

 Score = 1315 bits (3402), Expect = 0.0
 Identities = 658/791 (83%), Positives = 725/791 (91%), Gaps = 1/791 (0%)

>gb|AAN68810.1|AE016513_7 (AE016786) transporter, putative [Pseudomonas putida KT2440]
          Length = 826

 Score =  817 bits (2110), Expect = 0.0
 Identities = 424/788 (53%), Positives = 556/788 (70%), Gaps = 16/788 (2%)








 
Structural Features:
COG1033, COG1033, Predicted exporters of the RND superfamily 
CD-Length = 727 residues, 100.0% aligned
Score =  543 bits (1401), Expect = 2e-155
Identities = 194/774 (25%), Positives = 312/774 (40%), Gaps = 48/774 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17553




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32434




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:204_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:204
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
346
                           PA3079_tr
                           translation of PA3079
                           793
                           99.62
                           99.99
                           0
                           3994.0
     

     
     
21727
                           gb|AAG06467.1|AE004732_1
                           (AE004732) hypothetical protein PA3079 [Pseudomonas aeruginosa PAO1]
                           793
                           99.62
                           99.99
                           0
                           3994.0
     

     
     
21728
                           gb|AAO57246.1|
                           (AE016869) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           796
                           84.17
                           92.33
                           3
                           3441.0
     

     
     
21729
                           emb|CAD70191.1|
                           (AJ548826) hypothetical protein [Pseudomonas syringae]
                           797
                           83.06
                           91.96
                           5
                           3412.0
     

     
     
21730
                           gb|AAN67633.1|AE016393_2
                           (AE016781) membrane protein, putative [Pseudomonas putida KT2440]
                           799
                           82.35
                           90.73
                           6
                           3401.0
     

     






      

          
GC ORFID: 43206How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3079Glimmer Score: 

          
Start: 2840894Stop: 2838513

          
Length: 2382


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3079 translation of PA3079Homolog Bit Score 1543.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene734 (ORF: BLASTX 1315.0), t_PA3079 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGCCATGAACCAGCATCAGCAAAACAAGGCGAGCCTGCTCGAACGCCTGATCTTCAACAACCGGCCG 
GTGGTGATCTTCCTCTGCCTGCTGGTCAGCGTCTTCCTGTTCTACCAGGCCACCCAGGTGCGGCCGTCCACC 
AGCTTCGAGAAGATGATCCCGCTGGAGCACCCGTTCATCCAGAAAATGCTCGAGCACCGCAACGACCTGGCC 
AACCTCGGCAACACCGTGCGCATCTCGGTGGAGGCGGTGAACGGCGACATCTTCACCAAGGAGTACATGGAG 
ACGCTCCGGCAGATCCATGACGAGGTGTTCTACATCCCCGGCGTCGACCGTTCCGGCCTGAAGTCGTTGTGG 
AGCCCCAGCGTGCGCTGGACCGAAGTGACCGAGGAAGGCTTCGCCGGCGGCGAGGTGATCCCGCAGACCTAC 
GACGGTTCGCCGCGGGCGCTGGAGGAACTGCGCAACAACGTGCTCAAGTCCGGGCAGATCGGCCGCCTGGTG 
GCGAACAACTTCAAGTCGAGCATCGTCGACGTACCGCTGCTGGAGATGTACCCGAACCCGAAGAACCAGAGC 
GAACTGATCAAGCTCGACTACCGCCAGTTCTCCCATGAGCTGGAAGAGAAGATCCGCGACAAGTACCAGTTG 
CAGAATCCCAACGTGAAGGTGCACATCGTCGGCTTCGCGAAGAAGGTCGGCGACCTGATCGACGGGCTGGTG 
ATGGTGGTCGGCTTCTTCGGTATCTGCCTGCTGATCACCCTGGTCCTGCTGTACTGGTTCACCAAGTGCATC 
CGCAGCACCATCGCCGTGCTGATCACTACCCTGGTGGCGGTGCTCTGGCAGCTCGGCCTGCTCAACCTGGTC 
GGTTTCGGCCTCGATCCCTATTCGATGCTGGTGCCGTTCCTGATCTTCGCCATCGGCATCTCCCACGGCGTG 
CAGAAGATCAATGGCATCGCCTTGCAGTCCAGCGGCGCCGACAATGCGCTGATGGCGGCGCGGCTGACCTTC 
CGCCAACTGTTCCTGCCCGGGATGATCGCGATCCTCGCCGACGCCGTCGGCTTCATCACCCTGCTGGTGATC 
GACATCGGGGTGATCCGCGAGCTGGCCATCGGCGCCTCGATCGGCGTGGCGGTGATCGTCTTCACCAACCTG 
ATCCTGCTGCCCGTGGCGATCTCCTACATCGGCATCAGCAAGAAGGCAGTGCAGCGCAGCAAGGACGACGCG 
GTGCGCGAGCACCCGTTCTGGCGCCTGCTGTCGAACTTCGCCAGCCCGAAGGTGGCCCCGGTGTCCATCGCC 
ATCGCCTTGCTGATGCTCGGCGGCGGCCTCTGGTATGGCAAGCACCTGAAGATCGGCGACCTCGACCAGGGC 
GCGCCGGAACTGCGTCCCGACTCGCGCTACAACCTCGACAACGACTTCATCATCCGCAACTACTCGACCAGT 
TCGGACGTGCTGGTGGTGATGGTCAAGACCACCCCGGAAGGCTGCTCCACCCACCAGGCCCTGGCGGCCATG 
GACGAGCTGGCCTGGAAGCTGGAGAACACCGAGGGCGTGCAGTCGGCGATCTCGATGGTCACCGTGTCCAAG 
CAGGTGATCAAGGGGATGAACGAAGGCAACCTGAAATGGGAGACCCTGTCGCGCAACCAGGACGTGCTGAAC 
AACTCCATCGCCCGTGCCGACGGTCTCTACAACACCGACTGCTCGCTGGCGCCGCTGCTGGTCTTCCTCAAC 
GACCACAAGGCCGAGACCCTCGACCGCGCGGTGGCGGCGGTGCAGGCCTTCGCCGCGGAGAATGACAAGGAC 
GACCTGCAGTTCCAGCTGGCCGCCGGCAACGCCGGGATCGAGGCCGCCACCAACGAGGTGATCAAGCAGTCC 
GAACTGATCATCCTGGTGCTGGTGTACATCTGCGTGGCGGCCATGTGCATGATCACCTTCCGTTCCTTCGCC 
GCGACCCTCTGCATCGTCCTGCCGCTGATCCTCACCTCGGTGCTGGGCAACGCGCTGATGGCGGCGCTGGGC 
ATCGGCGTGAAGGTCGCGACCCTGCCGGTGATCGCCCTCGGCGTCGGCATCGGGGTGGACTACGGGATCTAC 
ATCTACACCCGCCTGGAGTCTTTCCTGCGCATGGGCCTGCCGTTGCAGGAGGCCTACTACGAGACCCTCCGC 
TCCACCGGCAAGGCGGTGCTGTTCACCGGCCTGTGCCTGGCGATCGGCGTGGCCACCTGGATCTTCTCGGCG 
ATCAAGTTCCAGGCCGACATGGGCCTGATGCTGACCTTCATGCTGCTCTGGAACATGTTCGGCGCCCTCTGG 
CTGCTGCCGGCCCTGGCGCGTTTCCTGATCAACCCGGCCAAGCTGCAGGCCAGGAAGGCCTCGCTGTTCGCT 
CACTGA