ViewGene
Locus Name:
GeneID:
Location:

GeneID:2038
TrivialName: PA14_35370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35370
PAO1 Ortholog Locus:PA2259
Sequence Length:1023
Protein Length:340
Start: 3145119
Stop: 3144097
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05647.1|AE004651_9 (AE004651) transcriptional regulator PtxS [Pseudomonas aeruginosa PAO1]
Identities = 339/340 (99%), Positives = 339/340 (99%)
Sequence:
GTGAATGGTTCAGTACTGCCCAGCCGTGGCCGCGTCACCATCAACCAGGTGGCCGAGGCCGCCGGCGTCTCC
AAGGCCAGCGTGTCGCGCTATATCGGCGGCGACCGCCAGTTGCTCGCCGATGCCACCGCCCGGCGCATCGAG
CGCGCCATCGACCAGCTCGACTACCGCCCCAACCAGATGGCCCGAGGCCTCAAGCGCGGGCGCACACGGCTG
ATCGGAATGCTGGTGGCGGACATCCTCAACCCCTACTCCGTGGCCGTCATGCATGGCGTGGAAACCGCCTGC
CGCGAACACGGCTACAGCCTGGTGGTGTGCAATACCGACCGCGACGACGAGCAGGAACGTCATCACCTGGCC
GCCCTGCAGTCCTACAACGTCGAAGGACTGATTGTGAACACCCTCGGCCACCATCCCGGCGAACTGCGCGCC
CTGCACCGCGAACTGCCGATGGTGCTGGTGGACCGCCAGTTGGCCGAGCTGGATACCGACCTGGTCGGCCTG
GACAACGCCGACGCCGTCGAACAGGCCCTGGACCACCTTCAACAACGCGGCTTCCGCGACATCCTGCTGGTC
ACCGAACCGCTCGACGGCACCAGCTCGCGGATCGAGCGGGTCCAGGCCTTCAATGCCTCCATCGGCCGGCGA
CCGGCGCTCAAGGGCCAGGTCCTGCAGACCGACGACTTCTTCCGCGACGGCCTGCGCGCCTTCCTTTCGGCC
AGCGGCCCCGGGCCGAAGGCGCTGTTCACCTGCAACGGCGTCGCCACCCTCTGCGCCACCCGCCAACTGCGC
GACCTCGGCTGCCGGCTGTTCGACGAGGTCGGCCTGCTGGCCCTGGACGAACTCGACTGGTACCCGCTGGTG
GGCAGCGGCATCACCGCCCTCGCCCAACCCACCGACGAAATCGGCCGCACCGCCTTCGAGCGCCTTCTGGCG
CGACTCGAAGGCGACCGCGAGCCGGCGCGCCGGGTGACCTTCCCGGCGCAACTGATCGTTCGCGGCTCGACC
CATCCACGCGGCTAG
Translation:
MNGSVLPSRGRVTINQVAEAAGVSKASVSRYIGGDRQLLADATARRIERAIDQLDYRPNQMARGLKRGRTRL
IGMLVADILNPYSVAVMHGVETACREHGYSLVVCNTDRDDEQERHHLAALQSYNVEGLIVNTLGHHPGELRA
LHRELPMVLVDRQLAELDTDLVGLDNADAVEQALDHLQQRGFRDILLVTEPLDGTSSRIERVQAFNASIGRR
PALKGQVLQTDDFFRDGLRAFLSASGPGPKALFTCNGVATLCATRQLRDLGCRLFDEVGLLALDELDWYPLV
GSGITALAQPTDEIGRTAFERLLARLEGDREPARRVTFPAQLIVRGSTHPRG*
AnnotationID:2046GeneID:2038
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:59
Gene Name:ptxS
Confidence Code:1
GeneProduct: transcriptional regulator PtxS
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:kgu operon transcriptional regulator
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1609
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68984.1|AE016530_7 (AE016786) transcriptional regulator PtxS [Pseudomonas putida
           KT2440]
          Length = 339

 Score =  484 bits (1247), Expect = e-136
 Identities = 245/332 (73%), Positives = 280/332 (84%)

>emb|CAB14129.1| (Z99115) transcriptional regulator (LacI family) [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 339

 Score =  244 bits (624), Expect = 4e-64
 Identities = 128/332 (38%), Positives = 201/332 (60%), Gaps = 6/332 (1%)








 
Structural Features:
COG1609, PurR, Transcriptional regulators [Transcription]
CD-Length = 333 residues, 100.0% aligned
Score =  258 bits (660), Expect = 8e-70
Identities = 121/335 (36%), Positives = 187/335 (55%), Gaps = 8/335 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32520




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2038_cdd.html


    		




 
URL:

















    ReferenceID:34449




  
Author/Investigator(s):
        Colmer JA, Hamood AN.





  
Title:
        Characterization of ptxS, a Pseudomonas aeruginosa gene which interferes with the effect of the exotoxin A positive regulatory gene, ptxR.




  
PubMed:
        9645431


MedLine:
        




    
Source:
Mol Gen Genet. 1998 May;258(3):250-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9645431

















    ReferenceID:34450




  
Author/Investigator(s):
        Colmer JA, Hamood AN.





  
Title:
        Molecular analysis of the Pseudomonas aeruginosa regulatory genes ptxR and ptxS.




  
PubMed:
        11683464


MedLine:
        




    
Source:
Can J Microbiol. 2001 Sep;47(9):820-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11683464









           
Homologs By Global Alignment 

           

       



     
Gene ID:2038
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3532
                           PA2259_tr
                           translation of PA2259
                           340
                           99.70
                           99.70
                           0
                           1729.0
     

     
     
109040
                           gb|AAG05647.1|AE004651_9
                           (AE004651) transcriptional regulator PtxS [Pseudomonas aeruginosa PAO1]
                           340
                           99.41
                           99.70
                           0
                           1726.0
     

     
     
109041
                           gb|AAC26482.1|
                           (AF012100) PtxS [Pseudomonas aeruginosa]
                           340
                           99.41
                           99.70
                           0
                           1726.0
     

     
     
109042
                           gb|AAN68984.1|AE016530_7
                           (AE016786) transcriptional regulator PtxS [Pseudomonas putida KT2440]
                           340
                           72.05
                           82.94
                           1
                           1243.0
     

     






      

          
GC ORFID: 45040How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2259Glimmer Score: 

          
Start: 1808797Stop: 1809819

          
Length: 1023


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2259 translation of PA2259Homolog Bit Score 670.0

          
Other Homologs:  t_PA2259 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAATGGTTCAGTACTGCCCAGCCGTGGCCGCGTCACCATCAACCAGGTGGCCGAGGCCGCCGGCGTCTCC 
AAGGCCAGCGTGTCGCGCTATATCGGCGGCGACCGCCAGTTGCTCGCCGATGCCACCGCCCGGCGCATCGAG 
CGCGCCATCGACCAGCTCGACTACCGCCCCAACCAGATGGCCCGAGGCCTCAAGCGCGGGCGCACACGGCTG 
ATCGGAATGCTGGTGGCGGACATCCTCAACCCCTACTCCGTGGCCGTCATGCATGGCGTGGAAACCGCCTGC 
CGCGAACACGGCTACAGCCTGGTGGTGTGCAATACCGACCGCGACGACGAGCAGGAACGTCATCACCTGGCC 
GCCCTGCAGTCCTACAACGTCGAAGGACTGATTGTGAACACCCTCGGCCACCATCCCGGCGAACTGCGCGCC 
CTGCACCGCGAACTGCCGATGGTGCTGGTGGACCGCCAGTTGGCCGAGCTGGATACCGACCTGGTCGGCCTG 
GACAACGCCGACGCCGTCGAACAGGCCCTGGACCACCTTCAACAACGCGGCTTCCGCGACATCCTGCTGGTC 
ACCGAACCGCTCGACGGCACCAGCTCGCGGATCGAGCGGGTCCAGGCCTTCAATGCCTCCATCGGCCGGCGA 
CCGGCGCTCAAGGGCCAGGTCCTGCAGACCGACGACTTCTTCCGCGACGGCCTGCGCGCCTTCCTTTCGGCC 
AGCGGCCCCGGGCCGAAGGCGCTGTTCACCTGCAACGGCGTCGCCACCCTCTGCGCCACCCGCCAACTGCGC 
GACCTCGGCTGCCGGCTGTTCGACGAGGTCGGCCTGCTGGCCCTGGACGAACTCGACTGGTACCCGCTGGTG 
GGCAGCGGCATCACCGCCCTCGCCCAACCCACCGACGAAATCGGCCGCACCGCCTTCGAGCGCCTTCTGGCG 
CGACTCGAAGGCGACCGCGAGCCGGCGCGCCGGGTGACCTTCCCGGCGCAACTGATCGTTCGCGGCTCGACC 
CATCCACGCGGCTAG