ViewGene
Locus Name:
GeneID:
Location:

GeneID:2037
TrivialName: PA14_51390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51390
PAO1 Ortholog Locus:PA0999
Sequence Length:1014
Protein Length:337
Start: 4567989
Stop: 4566976
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04388.1|AE004532_12 (AE004532) 3-oxoacyl-[acyl-carrier-protein] synthase III [Pseudomonas aeruginosa PAO1]
Identities = 336/337 (99%), Positives = 336/337 (99%)
Sequence:
ATGGGTAATCCGATCCTGGCCGGGCTGGGTTTCAGCCTGCCGAAACGCCAGGTCAGCAATCATGACCTGGTA
GGGCGCATCAACACGTCGGATGAGTTCATCGTTGAACGCACCGGCGTACGCACCCGCTATCACGTCGAGCCG
GAACAGGCGGTCAGCGCGCTGATGGTACCGGCGGCGCGCCAGGCCATCGAGGCTGCCGGGCTGCTGCCGGAG
GACATCGACCTGTTGCTGGTGAACACCCTGTCGCCGGACCACCACGACCCGTCCCAGGCCTGCCTGATCCAG
CCGCTGCTGGGCCTGCGGCACATCCCGGTGCTGGATATCCGGGCACAGTGCAGCGGGTTGCTGTACGGCTTG
CAGATGGCTCGCGGGCAGATCCTCGCCGGGCTGGCACGGCATGTCCTGGTGGTCTGCGGCGAGGTGCTGTCC
AAGCGCATGGACTGTTCGGACCGCGGCCGCAACCTGTCGATCCTGCTCGGCGACGGTGCCGGCGCGGTGGTG
GTCAGCGCCGGCGAGAGTCTCGAAGACGGACTGCTGGACCTGCGCCTGGGCGCCGACGGCAACTACTTCGAC
CTGCTGATGACCGCGGCGCCGGGTAGTGCCTCGCCGACCTTCCTCGATGAGAACGTCCTGCGCGAGGGCGGG
GGCGAGTTCCTCATGCGCGGCCGGCCGATGTTCGAGCATGCCAGCCAGACCCTGGTACGGATCGCCGGCGAA
ATGCTCGTGGCCCATGAGCTGACCTTGGACGACATCGACCATGTGATCTGCCATCAACCGAACCTGCGCATC
CTCGATGCGGTGCAGGAGCAACTGGGCATTCCCCAGCACAAGTTCGCGGTGACCGTGGATCGTCTGGGCAAC
ATGGCTTCGGCCTCGACCCCGGTCACGCTGGCGATGTTCTGGCCGGACATCCAGCCCGGACAGCGGGTGCTG
GTCCTGACCTACGGTTCCGGCGCGACCTGGGGCGCGGCGCTGTACCGTAAACCTGAGGAGGTGAACCGGCCA
TGTTGA
Translation:
MGNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIEAAGLLPE
DIDLLLVNTLSPDHHDPSQACLIQPLLGLRHIPVLDIRAQCSGLLYGLQMARGQILAGLARHVLVVCGEVLS
KRMDCSDRGRNLSILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGG
GEFLMRGRPMFEHASQTLVRIAGEMLVAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAVTVDRLGN
MASASTPVTLAMFWPDIQPGQRVLVLTYGSGATWGAALYRKPEEVNRPC*
AnnotationID:2045GeneID:2037
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:35
Gene Name:pqsD
Confidence Code:1
GeneProduct:3-oxoacyl-[acyl-carrier-protein] synthase III
Cell Localization:()
Synonyms:PA0999, fabH1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:beta-ketoacyl-ACP synthase III; acetyl CoA ACP transacetylase 
Functional Category Confidence Code:5
COGs:COG0332
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Fatty acid biosynthesis (path 1) 
Homology:






 
Structural Features:
COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]
       CD-Length = 323 residues, 100.0% aligned
       Score =  342 bits (880), Expect = 2e-95






   
Genomic Context:
part of pqsABCDE operon 






   
Comment:


















    ReferenceID:4077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32103




  
Author/Investigator(s):
        Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.





  
Title:
        Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.




  
PubMed:
        12426334


MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2037
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3531
                           PA0999_tr
                           translation of PA0999
                           337
                           99.70
                           99.70
                           0
                           1729.0
     

     
     
109035
                           gb|AAG04388.1|AE004532_12
                           (AE004532) 3-oxoacyl-[acyl-carrier-protein] synthase III [Pseudomonas aeruginosa PAO1]
                           337
                           99.70
                           99.70
                           0
                           1729.0
     

     
     
109036
                           gb|AAA88446.1|
                           (M33810) unknown protein [Pseudomonas aeruginosa]
                           337
                           67.65
                           67.65
                           108
                           1177.0
     

     
     
109037
                           emb|CAD14752.1|
                           (AL646062) PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III [Ralstonia solanacearum]
                           347
                           40.05
                           55.33
                           31
                           558.0
     

     
     
109038
                           gb|AAM40316.1|
                           (AE012198) beta-ketoacyl-[ACP] synthase III [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           342
                           39.47
                           57.89
                           22
                           555.0
     

     






      

          
GC ORFID: 45039How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0999Glimmer Score: 

          
Start: 385918Stop: 386931

          
Length: 1014


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0999 translation of PA0999Homolog Bit Score 670.0

          
Other Homologs:  t_PA0999 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTAATCCGATCCTGGCCGGGCTGGGTTTCAGCCTGCCGAAACGCCAGGTCAGCAATCATGACCTGGTA 
GGGCGCATCAACACGTCGGATGAGTTCATCGTTGAACGCACCGGCGTACGCACCCGCTATCACGTCGAGCCG 
GAACAGGCGGTCAGCGCGCTGATGGTACCGGCGGCGCGCCAGGCCATCGAGGCTGCCGGGCTGCTGCCGGAG 
GACATCGACCTGTTGCTGGTGAACACCCTGTCGCCGGACCACCACGACCCGTCCCAGGCCTGCCTGATCCAG 
CCGCTGCTGGGCCTGCGGCACATCCCGGTGCTGGATATCCGGGCACAGTGCAGCGGGTTGCTGTACGGCTTG 
CAGATGGCTCGCGGGCAGATCCTCGCCGGGCTGGCACGGCATGTCCTGGTGGTCTGCGGCGAGGTGCTGTCC 
AAGCGCATGGACTGTTCGGACCGCGGCCGCAACCTGTCGATCCTGCTCGGCGACGGTGCCGGCGCGGTGGTG 
GTCAGCGCCGGCGAGAGTCTCGAAGACGGACTGCTGGACCTGCGCCTGGGCGCCGACGGCAACTACTTCGAC 
CTGCTGATGACCGCGGCGCCGGGTAGTGCCTCGCCGACCTTCCTCGATGAGAACGTCCTGCGCGAGGGCGGG 
GGCGAGTTCCTCATGCGCGGCCGGCCGATGTTCGAGCATGCCAGCCAGACCCTGGTACGGATCGCCGGCGAA 
ATGCTCGTGGCCCATGAGCTGACCTTGGACGACATCGACCATGTGATCTGCCATCAACCGAACCTGCGCATC 
CTCGATGCGGTGCAGGAGCAACTGGGCATTCCCCAGCACAAGTTCGCGGTGACCGTGGATCGTCTGGGCAAC 
ATGGCTTCGGCCTCGACCCCGGTCACGCTGGCGATGTTCTGGCCGGACATCCAGCCCGGACAGCGGGTGCTG 
GTCCTGACCTACGGTTCCGGCGCGACCTGGGGCGCGGCGCTGTACCGTAAACCTGAGGAGGTGAACCGGCCA 
TGTTGA