ViewGene
Locus Name:
GeneID:
Location:

GeneID:2036
TrivialName: PA14_69140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69140
PAO1 Ortholog Locus:PA5236
Sequence Length:969
Protein Length:322
Start: 6167474
Stop: 6166506
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08621.1|AE004936_4 (AE004936) probable aromatic hydrocarbon reductase [Pseudomonas aeruginosa PAO1]
Identities = 322/322 (100%), Positives = 322/322 (100%)
Sequence:
ATGCGTATCGTCCTGCAACCGTCCGGCGCCTGCCTCGAGCTGCTGCCGGGGGAACGCATCCTCGATGGCGCC
CGGCGGCTTGGCTACGACTGTCCGCAGAGCTGCCGCAACGGCAACTGCCATATCTGCGCGGCGCTGCTGGTG
GAGGGGCGGGTACGCCAAAACGGCGAGGTACGCGATCATGGCGAACTCTTCACCTGCCTCGCCGAGCCGCTG
GAAGACTGCGTGCTGCATTGGGACGGGGTGCTGGCGCCGGGTGAACTGCCTCTGCGCAAGCTGACCTGCCAG
TTGAGCTTCTGCGAAGAGGTCGGCGGCGACGTCTACCGGGTCGGCCTGCGCGCGCCGGCCGGCAAGCCGCCA
CGCTATCACGCCGGGCAGTACCTGTTGCTGGAGCGTGACGGCGGCGACAGCGCGGCGTTTTCCCTGGCCTCC
GCGCCGCATGCGGGACGCGACCTTGAGTTGCACATCCTGGCCAAGGAAGACAGTGCCGTCGCGCTGATCGCA
CAGTTGCAGCGCGAGCGCCTGGCACGGATCCAGCTGCCGTTCGGCGACGCGCACCTGGCGGAACTGCCCGAC
GGTCCGCTGGTGCTGATCGCTGCGGGAACCGGCATGTCTCAGATGCACAGCCTGATCGAGCACTGCCGCGCC
GCCGGCTTCGCCCATCCTGTACATCTCTACTGGGGCGTTCGGCGTCCGGAGGATTTCTACCGACTGCCGCAC
TGGACGGAGTGGGAAGGCCTGCCGAACCTGTTCCTGCACCGGGTGGTCAGCGACCTCTGTGGCTGGGAGGGG
CGTTGCGGCTTGCTGCACGAGGCGGTGCGCGAGGATTTCGCCGACCTGTCGAGCCTGCATGTGTATGCCAGC
GGCTCGCCGGCGATGGTCTACGCGACCCTGGATGCCCTGGTCGAAGCAGGGATGGACGCGCACCAGATGCGC
GCCGACGTGTTCGCCTACGCGCCGCGGGACTGA
Translation:
MRIVLQPSGACLELLPGERILDGARRLGYDCPQSCRNGNCHICAALLVEGRVRQNGEVRDHGELFTCLAEPL
EDCVLHWDGVLAPGELPLRKLTCQLSFCEEVGGDVYRVGLRAPAGKPPRYHAGQYLLLERDGGDSAAFSLAS
APHAGRDLELHILAKEDSAVALIAQLQRERLARIQLPFGDAHLAELPDGPLVLIAAGTGMSQMHSLIEHCRA
AGFAHPVHLYWGVRRPEDFYRLPHWTEWEGLPNLFLHRVVSDLCGWEGRCGLLHEAVREDFADLSSLHVYAS
GSPAMVYATLDALVEAGMDAHQMRADVFAYAPRD*
AnnotationID:2044GeneID:2036
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative aromatic hydrocarbon reductase
Cell Localization:()
Synonyms:ubiB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative 2-polyprenylphenol hydroxylase
Functional Category Confidence Code:5
COGs:COG0543
Secondary Functional Category(ies):coenyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70777.1|AE016721_10 (AE016793) oxidoreductase, iron-sulfur-binding [Pseudomonas putida
           KT2440]
          Length = 322

 Score =  562 bits (1449), Expect = e-160
 Identities = 263/321 (81%), Positives = 292/321 (90%)

>gb|AAO58666.1| (AE016875) oxidoreductase, iron-sulfur-binding [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 322

 Score =  546 bits (1408), Expect = e-155
 Identities = 249/321 (77%), Positives = 290/321 (90%)








 
Structural Features:
COG0543, UbiB, 2-polyprenylphenol hydroxylase and related 
flavodoxin oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 252 residues,  84.9% aligned
Score =  158 bits (401), Expect = 7e-40
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 7/220 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4075




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21221




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34869




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2036_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2036
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3530
                           PA5236_tr
                           translation of PA5236
                           322
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
109032
                           gb|AAG08621.1|AE004936_4
                           (AE004936) probable aromatic hydrocarbon reductase [Pseudomonas aeruginosa PAO1]
                           322
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
109033
                           gb|AAN70777.1|AE016721_10
                           (AE016793) oxidoreductase, iron-sulfur-binding [Pseudomonas putida KT2440]
                           322
                           81.67
                           90.68
                           0
                           1448.0
     

     
     
109034
                           gb|AAO58666.1|
                           (AE016875) oxidoreductase, iron-sulfur-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           322
                           77.32
                           90.06
                           0
                           1407.0
     

     






      

          
GC ORFID: 45038How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5236Glimmer Score: 

          
Start: 5431161Stop: 5430193

          
Length: 969


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5236 translation of PA5236Homolog Bit Score 671.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3213 (ORF: BLASTX 548.0), t_PA5236 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCGTCCTGCAACCGTCCGGCGCCTGCCTCGAGCTGCTGCCGGGGGAACGCATCCTCGATGGCGCC 
CGGCGGCTTGGCTACGACTGTCCGCAGAGCTGCCGCAACGGCAACTGCCATATCTGCGCGGCGCTGCTGGTG 
GAGGGGCGGGTACGCCAAAACGGCGAGGTACGCGATCATGGCGAACTCTTCACCTGCCTCGCCGAGCCGCTG 
GAAGACTGCGTGCTGCATTGGGACGGGGTGCTGGCGCCGGGTGAACTGCCTCTGCGCAAGCTGACCTGCCAG 
TTGAGCTTCTGCGAAGAGGTCGGCGGCGACGTCTACCGGGTCGGCCTGCGCGCGCCGGCCGGCAAGCCGCCA 
CGCTATCACGCCGGGCAGTACCTGTTGCTGGAGCGTGACGGCGGCGACAGCGCGGCGTTTTCCCTGGCCTCC 
GCGCCGCATGCGGGACGCGACCTTGAGTTGCACATCCTGGCCAAGGAAGACAGTGCCGTCGCGCTGATCGCA 
CAGTTGCAGCGCGAGCGCCTGGCACGGATCCAGCTGCCGTTCGGCGACGCGCACCTGGCGGAACTGCCCGAC 
GGTCCGCTGGTGCTGATCGCTGCGGGAACCGGCATGTCTCAGATGCACAGCCTGATCGAGCACTGCCGCGCC 
GCCGGCTTCGCCCATCCTGTACATCTCTACTGGGGCGTTCGGCGTCCGGAGGATTTCTACCGACTGCCGCAC 
TGGACGGAGTGGGAAGGCCTGCCGAACCTGTTCCTGCACCGGGTGGTCAGCGACCTCTGTGGCTGGGAGGGG 
CGTTGCGGCTTGCTGCACGAGGCGGTGCGCGAGGATTTCGCCGACCTGTCGAGCCTGCATGTGTATGCCAGC 
GGCTCGCCGGCGATGGTCTACGCGACCCTGGATGCCCTGGTCGAAGCAGGGATGGACGCGCACCAGATGCGC 
GCCGACGTGTTCGCCTACGCGCCGCGGGACTGA