ViewGene
Locus Name:
GeneID:
Location:

GeneID:2035
TrivialName: PA14_67490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67490
PAO1 Ortholog Locus:PA5110
Sequence Length:1011
Protein Length:336
Start: 6025727
Stop: 6024717
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08495.1|AE004923_11 (AE004923) fructose-1,6-bisphosphatase [Pseudomonas aeruginosa PAO1]
Identities = 335/336 (99%), Positives = 336/336 (100%)
Sequence:
ATGTCCCGCGTTACCCTGAGCCGCTATCTGATCGAGCAGACCCGCAGCCACAACACCCCGGCCGACCTGCGC
TTCCTCATCGAGGTCGTGGCGCGTGCCTGCAAGGAAATCAGCCATGCGGTGTCCAAGGGCGCGCTGGGCGGC
GTACTCGGCAGCATGGGCACCGAGAACGTGCAGGGCGAGGTGCAGAAGAAGCTGGACGTGATGTCCAACGAG
ATCCTGCTGGAAGCCAACGAATGGGCCGGCAACCTGGCCGGCATGGCCTCCGAGGAGATGGACCACCCCTAC
CAGATTCCGGGGCGCTACCCGAAAGGCGCCTACCTGCTGGTCTTCGACCCGCTGGACGGCTCCAGCAACATC
GACGTCAACGTCTCGGTCGGCACCATCTTCTCGGTGCTGCGCTGCCCCAGCGAGTACCTGAACCAGAACGAT
ACCCTGCGCGAGGAGGCCTTCCTCCAGCCGGGCACCACCCAGGTCGCCGCCGGCTACGCCATCTACGGCCCG
CAGACCATGCTGATGCTGACCCTCGGCAACGGCGTCAAGGGCTTCACCCTGGACCGCGAGCTGGGCAGCTTC
GTCCTCACCCACGACAACATCAGCGTGCCGGAAAGCACCGCCGAGTTCGCCATCAACATGTCCAACCAGCGC
CACTGGGAAGCGCCGGTGAAACGCTACGTGGAAGAACTGCTGGCCGGCAAGGAAGGTCCGCTGGGCAAGAAC
TACAACATGCGCTGGATCGCCTCGATGGTCGCCGACGTCCACCGCATCCTGACCCGCGGCGGCGTCTTCATG
TACCCGCGCGACGCCCGCGAGCCGGAGAAGCCCGGCAAGCTGCGCCTGATGTACGAAGCCAACCCGATGTCG
TTCATCATCGAGCAGGCCGGCGGCGCCGCCACCAACGGCACCCAGCGCATCCTCGACATCAAGCCGGAGAAC
CTGCACCAGCGTGTCGCGGTGTTCCTCGGCTCGAAGCAGGAAGTCGAGCGCATCACCGGCTACCACGCGGAG
TAG
Translation:
MSRVTLSRYLIEQTRSHNTPADLRFLIEVVARACKEISHAVSKGALGGVLGSMGTENVQGEVQKKLDVMSNE
ILLEANEWAGNLAGMASEEMDHPYQIPGRYPKGAYLLVFDPLDGSSNIDVNVSVGTIFSVLRCPSEYLNQND
TLREEAFLQPGTTQVAAGYAIYGPQTMLMLTLGNGVKGFTLDRELGSFVLTHDNISVPESTAEFAINMSNQR
HWEAPVKRYVEELLAGKEGPLGKNYNMRWIASMVADVHRILTRGGVFMYPRDAREPEKPGKLRLMYEANPMS
FIIEQAGGAATNGTQRILDIKPENLHQRVAVFLGSKQEVERITGYHAE*
AnnotationID:2043GeneID:2035
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 12:12:44
Gene Name:fbp
Confidence Code:2
GeneProduct:fructose-1,6-bisphosphatase
Cell Localization:()
Synonyms:cbbF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0158,pfam00316
Secondary Functional Category(ies):carbon compound catabolism
EC Number:3.1.3.11
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70605.1|AE016703_5 (AE016793) fructose-1,6-bisphosphatase [Pseudomonas putida KT2440]
          Length = 336

 Score =  607 bits (1564), Expect = e-173
 Identities = 300/336 (89%), Positives = 321/336 (95%)

>gb|AAO58594.1| (AE016874) fructose-1,6-bisphosphatase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 336

 Score =  595 bits (1533), Expect = e-169
 Identities = 287/336 (85%), Positives = 320/336 (95%)

>emb|CAE41171.1| (BX640413) fructose-1,6-bisphosphatase [Bordetella pertussis]
          Length = 339

 Score =  496 bits (1278), Expect = e-140
 Identities = 249/337 (73%), Positives = 285/337 (84%), Gaps = 3/337 (0%)






 
Structural Features:
COG0158, Fbp, Fructose-1,6-bisphosphatase 
[Carbohydrate transport and metabolism]
CD-Length = 326 residues,  99.4% aligned
Score =  477 bits (1230), Expect = 6e-136
Identities = 189/335 (56%), Positives = 236/335 (70%), Gaps = 12/335 (3%)

pfam00316, FBPase, Fructose-1-6-bisphosphatase.
CD-Length = 324 residues, 100.0% aligned
Score =  403 bits (1036), Expect = 2e-113
Identities = 166/332 (50%), Positives = 219/332 (65%), Gaps = 9/332 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4073




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34968




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2035_cdd.html


    		




 
URL:

















    ReferenceID:35806




  
Author/Investigator(s):
        Yoo JG, Bowien B.





  
Title:
        Analysis of the cbbF genes from Alcaligenes eutrophus that encode fructose-1,6-/sedoheptulose-1,7-bisphosphatase.




  
PubMed:
        7767230


MedLine:
        




    
Source:
Curr Microbiol. 1995 Jul;31(1):55-61.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7767230

















    ReferenceID:35807




  
Author/Investigator(s):
        Berish SA, Kapczynski DR, Morse SA.





  
Title:
        Nucleotide sequence of the Fbp gene from Neisseria meningitidis.




  
PubMed:
        2117747


MedLine:
        




    
Source:
Nucleic Acids Res. 1990 Aug 11;18(15):4596.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2117747









           
Homologs By Global Alignment 

           

       



     
Gene ID:2035
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3529
                           PA5110_tr
                           translation of PA5110
                           336
                           99.70
                           99.99
                           0
                           1732.0
     

     
     
108967
                           gb|AAG08495.1|AE004923_11
                           (AE004923) fructose-1,6-bisphosphatase [Pseudomonas aeruginosa PAO1]
                           336
                           99.70
                           99.99
                           0
                           1732.0
     

     
     
108968
                           gb|AAN70605.1|AE016703_5
                           (AE016793) fructose-1,6-bisphosphatase [Pseudomonas putida KT2440]
                           336
                           89.28
                           95.53
                           0
                           1564.0
     

     
     
108969
                           gb|AAO58594.1|
                           (AE016874) fructose-1,6-bisphosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           336
                           85.41
                           95.23
                           0
                           1533.0
     

     
     
108973
                           emb|CAE37777.1|
                           (BX640430) fructose-1,6-bisphosphatase [Bordetella parapertussis]
                           341
                           73.02
                           83.57
                           7
                           1282.0
     

     






      

          
GC ORFID: 45037How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5110Glimmer Score: 

          
Start: 5289412Stop: 5288402

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5110 translation of PA5110Homolog Bit Score 671.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3813 (ORF: BLASTX 594.0), t_PA5110 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGCGTTACCCTGAGCCGCTATCTGATCGAGCAGACCCGCAGCCACAACACCCCGGCCGACCTGCGC 
TTCCTCATCGAGGTCGTGGCGCGTGCCTGCAAGGAAATCAGCCATGCGGTGTCCAAGGGCGCGCTGGGCGGC 
GTACTCGGCAGCATGGGCACCGAGAACGTGCAGGGCGAGGTGCAGAAGAAGCTGGACGTGATGTCCAACGAG 
ATCCTGCTGGAAGCCAACGAATGGGCCGGCAACCTGGCCGGCATGGCCTCCGAGGAGATGGACCACCCCTAC 
CAGATTCCGGGGCGCTACCCGAAAGGCGCCTACCTGCTGGTCTTCGACCCGCTGGACGGCTCCAGCAACATC 
GACGTCAACGTCTCGGTCGGCACCATCTTCTCGGTGCTGCGCTGCCCCAGCGAGTACCTGAACCAGAACGAT 
ACCCTGCGCGAGGAGGCCTTCCTCCAGCCGGGCACCACCCAGGTCGCCGCCGGCTACGCCATCTACGGCCCG 
CAGACCATGCTGATGCTGACCCTCGGCAACGGCGTCAAGGGCTTCACCCTGGACCGCGAGCTGGGCAGCTTC 
GTCCTCACCCACGACAACATCAGCGTGCCGGAAAGCACCGCCGAGTTCGCCATCAACATGTCCAACCAGCGC 
CACTGGGAAGCGCCGGTGAAACGCTACGTGGAAGAACTGCTGGCCGGCAAGGAAGGTCCGCTGGGCAAGAAC 
TACAACATGCGCTGGATCGCCTCGATGGTCGCCGACGTCCACCGCATCCTGACCCGCGGCGGCGTCTTCATG 
TACCCGCGCGACGCCCGCGAGCCGGAGAAGCCCGGCAAGCTGCGCCTGATGTACGAAGCCAACCCGATGTCG 
TTCATCATCGAGCAGGCCGGCGGCGCCGCCACCAACGGCACCCAGCGCATCCTCGACATCAAGCCGGAGAAC 
CTGCACCAGCGTGTCGCGGTGTTCCTCGGCTCGAAGCAGGAAGTCGAGCGCATCACCGGCTACCACGCGGAG 
TAG