ViewGene
Locus Name:
GeneID:
Location:

GeneID:2034
TrivialName: PA14_64690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64690
PAO1 Ortholog Locus:PA4895
Sequence Length:1023
Protein Length:340
Start: 5762057
Stop: 5761035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08280.1|AE004902_8 (AE004902) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 338/340 (99%), Positives = 339/340 (99%)
Sequence:
ATGAATGACCGCGCTTCCAGCCGGGCGCCGCAGGCGGGCGATACGGAGCTTTCCGGGCCGCCGGCCGCCGAG
GCGATCGCCCCGCAGGTGCTCAGGGAGACCGCCTCCTGGCTGCTGCTGATGCAGGAGGGGCCGCTGGCTCCG
GCGCAGCAGGCCGAGCTGGAGTCCTGGCGCTCGCGCAGCCCCGAGCACCAGCGCGCCTGGCGGCGCGCCGAG
CGTCTGCTGGCGAATATCGGTTCGCTGCCGCCGGCGCTGGCCCGGCGTGCGCTCGAGCGTCCGTCCGGCAGC
GGCCGGCGCGCGGTCCTGCGTGGCCTGGCCCTGCTGCTCGGCGGCGCACCGCTGGTCTGGTGGGGATGGCGC
GCCCAGGTCTGGCGCGACGGCTTCGGCGCCGACTACCTCACTGCCGTCGGCGAGCGGCGCGATCTGGTGCTG
GAGGACGGCAGCCAGCTCGAGATGAACACCGACAGCGCGCTGGACGTGCGCTACGACGCCGGCCAGCGCCTG
CTGCGCCTGTATCGCGGAGAGATCTACCTCCGCACCGCGGCGGATCGGCGCGAGCCGCCGCGGCCGTTCCTG
GTGCGCACCGAACAGGGCCTGATGCGCGCGCTGGGTACCGCCTTCAGCGTCCGACGCGAGGGCGCAGAGACA
GTGCTGGCGGTGTACGAAGGCGCGGTCCAGGTGCGTCCGGAGGGCGCCGCGAGCGCGGCGGATGGCCGGGTG
ATCGAGGCTGGCCAGCGGGTGCGCTTCGATCGCCAGCGGATCGGCCCCGTCGAGTCCGCCAGCGAGGCCGCG
CTGGCCTGGCGCCAGGGCCTGCTGGTGGCCGACGACATGCCGCTGCGGCAGTGGGCGGGAGAACTGATGCGC
TACGGGGGCGAGAGCATCGAGTGCGAGCCGTCGCTGGACCCGCTTCGGGTCTCCGGTACCTTTCCCGTCGAC
GACCTGCCGCTGGCCCTGGCGATGCTGGCGCAGACCCATGGCCTGCGCCTCGTGCACCAAGGTCGGCGGGTG
CTGATCAGGCGCTGA
Translation:
MNDRASSRAPQAGDTELSGPPAAEAIAPQVLRETASWLLLMQEGPLAPAQQAELESWRSRSPEHQRAWRRAE
RLLANIGSLPPALARRALERPSGSGRRAVLRGLALLLGGAPLVWWGWRAQVWRDGFGADYLTAVGERRDLVL
EDGSQLEMNTDSALDVRYDAGQRLLRLYRGEIYLRTAADRREPPRPFLVRTEQGLMRALGTAFSVRREGAET
VLAVYEGAVQVRPEGAASAADGRVIEAGQRVRFDRQRIGPVESASEAALAWRQGLLVADDMPLRQWAGELMR
YGGESIECEPSLDPLRVSGTFPVDDLPLALAMLAQTHGLRLVHQGRRVLIRR*
AnnotationID:2042GeneID:2034
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:58
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA4895
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85009.1| (BX321859) putative transmembrane sensor [Nitrosomonas europaea
           ATCC 19718]
          Length = 328

 Score =  250 bits (639), Expect = 8e-66
 Identities = 129/319 (40%), Positives = 194/319 (60%), Gaps = 2/319 (0%)








 
Structural Features:
pfam04773, FecR, FecR protein. FecR is involved in regulation of 
iron dicitrate transport. 
In the absence of citrate FecR inactivates FecI. 
FecR is probably a sensor that recognises iron dicitrate in the periplasm.
CD-Length = 323 residues,  98.8% aligned
Score =  274 bits (701), Expect = 1e-74
Identities = 161/323 (49%), Positives = 198/323 (61%), Gaps = 12/323 (3%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues,  97.8% aligned
Score =  243 bits (621), Expect = 3e-65
Identities = 155/324 (47%), Positives = 191/324 (58%), Gaps = 10/324 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4071




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35163




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2034_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2034
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3527
                           PA4895_tr
                           translation of PA4895
                           340
                           99.41
                           99.70
                           0
                           1731.0
     

     
     
108962
                           gb|AAG08280.1|AE004902_8
                           (AE004902) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           340
                           99.41
                           99.70
                           0
                           1731.0
     

     
     
108963
                           emb|CAD85009.1|
                           (BX321859) putative transmembrane sensor [Nitrosomonas europaea ATCC 19718]
                           342
                           39.47
                           58.47
                           16
                           634.0
     

     
     
3528
                           PA1911_tr
                           translation of PA1911
                           357
                           38.37
                           50.14
                           58
                           544.0
     

     
     
108965
                           gb|AAG05299.1|AE004617_3
                           (AE004617) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           357
                           38.37
                           50.14
                           58
                           544.0
     

     






      

          
GC ORFID: 45036How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4895Glimmer Score: 

          
Start: 5025738Stop: 5024716

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4895 translation of PA4895Homolog Bit Score 671.0

          
Other Homologs:  t_PA1911 (ORF: BLASTX 212.0), t_PA4895 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGACCGCGCTTCCAGCCGGGCGCCGCAGGCGGGCGATACGGAGCTTTCCGGGCCGCCGGCCGCCGAG 
GCGATCGCCCCGCAGGTGCTCAGGGAGACCGCCTCCTGGCTGCTGCTGATGCAGGAGGGGCCGCTGGCTCCG 
GCGCAGCAGGCCGAGCTGGAGTCCTGGCGCTCGCGCAGCCCCGAGCACCAGCGCGCCTGGCGGCGCGCCGAG 
CGTCTGCTGGCGAATATCGGTTCGCTGCCGCCGGCGCTGGCCCGGCGTGCGCTCGAGCGTCCGTCCGGCAGC 
GGCCGGCGCGCGGTCCTGCGTGGCCTGGCCCTGCTGCTCGGCGGCGCACCGCTGGTCTGGTGGGGATGGCGC 
GCCCAGGTCTGGCGCGACGGCTTCGGCGCCGACTACCTCACTGCCGTCGGCGAGCGGCGCGATCTGGTGCTG 
GAGGACGGCAGCCAGCTCGAGATGAACACCGACAGCGCGCTGGACGTGCGCTACGACGCCGGCCAGCGCCTG 
CTGCGCCTGTATCGCGGAGAGATCTACCTCCGCACCGCGGCGGATCGGCGCGAGCCGCCGCGGCCGTTCCTG 
GTGCGCACCGAACAGGGCCTGATGCGCGCGCTGGGTACCGCCTTCAGCGTCCGACGCGAGGGCGCAGAGACA 
GTGCTGGCGGTGTACGAAGGCGCGGTCCAGGTGCGTCCGGAGGGCGCCGCGAGCGCGGCGGATGGCCGGGTG 
ATCGAGGCTGGCCAGCGGGTGCGCTTCGATCGCCAGCGGATCGGCCCCGTCGAGTCCGCCAGCGAGGCCGCG 
CTGGCCTGGCGCCAGGGCCTGCTGGTGGCCGACGACATGCCGCTGCGGCAGTGGGCGGGAGAACTGATGCGC 
TACGGGGGCGAGAGCATCGAGTGCGAGCCGTCGCTGGACCCGCTTCGGGTCTCCGGTACCTTTCCCGTCGAC 
GACCTGCCGCTGGCCCTGGCGATGCTGGCGCAGACCCATGGCCTGCGCCTCGTGCACCAAGGTCGGCGGGTG 
CTGATCAGGCGCTGA