ViewGene
Locus Name:
GeneID:
Location:

GeneID:2031
TrivialName: PA14_17530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17530
PAO1 Ortholog Locus:PA3617
Sequence Length:1041
Protein Length:346
Start: 1505405
Stop: 1506445
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07005.1|AE004782_3 (AE004782) RecA protein [Pseudomonas aeruginosa PAO1]
Identities = 346/346 (100%), Positives = 346/346 (100%)
Sequence:
ATGGACGAGAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAAGGCGCG
GTCATGCGCATGGGCGACCATGAGCGCCAGGCGATCCCGGCCATCTCCACCGGCTCCCTGGGCCTGGACATC
GCCCTCGGCATCGGCGGCCTGCCCAAGGGCCGGATCGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACC
ACCCTGACCCTCTCGGTGATCGCCGAGGCCCAGAAACAGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCAC
GCGCTCGATCCCGACTATGCCGGCAAGCTGGGCGTCAACGTCGACGACCTGCTGGTCTCCCAGCCGGACACC
GGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCGGTCGACGTGATCATCGTCGACTCC
GTGGCCGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGACGCCCACGTCGGCCTGCAGGCACGC
CTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAATATCAAGAACGCCAACTGCCTGGTCATCTTCATCAAC
CAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCACTGAAGTTC
TACGCCTCGGTCCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGTAGCGAA
ACCCGCGTCAAGGTGGTGAAGAACAAGGTTTCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGC
AAGGGCATCTACCGTACCGGCGAGATCATCGACCTGGGCGTGCAATTGGGCCTGGTCGAGAAGTCCGGCGCC
TGGTACAGCTACCAGGGCAGCAAGATCGGCCAGGGCAAGGCGAACGCCGCCAAGTACCTGGAAGACAATCCG
GAAATCGGTTCGGTACTGGAGAAGACCATCCGCGACCAGCTGCTGGCCAAGAGCGGTCCGGTGAAGGCCGAC
GCCGAAGAAGTGGCTGACGCCGAAGCCGATTGA
Translation:
MDENKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKT
TLTLSVIAEAQKQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDS
VAALVPKAEIEGEMGDAHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKF
YASVRLDIRRTGAVKEGDEVVGSETRVKVVKNKVSPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGA
WYSYQGSKIGQGKANAAKYLEDNPEIGSVLEKTIRDQLLAKSGPVKADAEEVADAEAD*
AnnotationID:9GeneID:2031
AnnotatorUID: diggins
Modification Date/Time: 2006-02-05 10:10:07
Gene Name:recA
Confidence Code:1
GeneProduct:RecA protein
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00154,cd00983,COG0468
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC36872.1| (L12684) recA protein [Pseudomonas putida]
          Length = 355

 Score =  615 bits (1586), Expect = e-175
 Identities = 317/353 (89%), Positives = 333/353 (94%), Gaps = 8/353 (2%)

emb|CAA04233.1| (AJ000677) recA protein [Allochromatium vinosum]
          Length = 347

 Score =  519 bits (1337), Expect = e-147
 Identities = 265/346 (76%), Positives = 301/346 (86%), Gaps = 4/346 (1%)

>emb|CAA67699.1| (X99324) RecA protein [Pasteurella multocida]
          Length = 354

 Score =  513 bits (1321), Expect = e-145
 Identities = 257/340 (75%), Positives = 301/340 (88%), Gaps = 2/340 (0%)







 
Structural Features:
pfam00154, RecA, recA bacterial DNA recombination protein.
CD-Length = 324 residues, 100.0% aligned
Score =  555 bits (1432), Expect = 3e-159
Identities = 248/324 (76%), Positives = 286/324 (88%), Gaps = 2/324 (0%)

cd00983, recA, RecA is a bacterial enzyme which has roles in homologous recombination, 
DNA repair, and the induction of the SOS response.
CD-Length = 325 residues, 100.0% aligned
Score =  536 bits (1383), Expect = 1e-153

COG0468, RecA, RecA/RadA recombinase 
[DNA replication, recombination, and repair].
CD-Length = 279 residues,  99.3% aligned
Score =  311 bits (798), Expect = 9e-86







   
Genomic Context:






   
Comment:


















    ReferenceID:4065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38324




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2031_cdd.html


    		




 
URL:

















    ReferenceID:38325




  
Author/Investigator(s):
        Kokjohn TA, Miller RV.





  
Title:
        Molecular cloning and characterization of the recA gene of Pseudomonas aeruginosa PAO.




  
PubMed:
        2991195


MedLine:
        




    
Source:
J Bacteriol. 1985 Aug;163(2):568-72.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=2991195

















    ReferenceID:38326




  
Author/Investigator(s):
        Sano Y, Kageyama M.





  
Title:
        The sequence and function of the recA gene and its protein in Pseudomonas aeruginosa PAO.




  
PubMed:
        2823059


MedLine:
        




    
Source:
Mol Gen Genet. 1987 Jul;208(3):412-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2823059&query_hl=2&itool=pubmed_DocSum









           
Homologs By Global Alignment 

           

       



     
Gene ID:2031
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3523
                           PA3617_tr
                           translation of PA3617
                           346
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
107715
                           gb|AAG07005.1|AE004782_3
                           (AE004782) RecA protein [Pseudomonas aeruginosa PAO1]
                           346
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
107716
                           emb|CAA36504.1|
                           (X52261) unnamed protein product [Pseudomonas aeruginosa]
                           346
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
107717
                           emb|CAA29173.1|
                           (X05691) unnamed protein product [Pseudomonas aeruginosa]
                           346
                           99.99
                           99.99
                           0
                           1730.0
     

     
     
107718
                           gb|AAC36872.1|
                           (L12684) recA protein [Pseudomonas putida]
                           355
                           89.29
                           93.80
                           9
                           1590.0
     

     






      

          
GC ORFID: 45033How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3617Glimmer Score: 

          
Start: 3448532Stop: 3447492

          
Length: 1041


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3617 translation of PA3617Homolog Bit Score 671.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4658 (ORF: BLASTX 595.0), t_PA3617 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGAGAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAAGGCGCG 
GTCATGCGCATGGGCGACCATGAGCGCCAGGCGATCCCGGCCATCTCCACCGGCTCCCTGGGCCTGGACATC 
GCCCTCGGCATCGGCGGCCTGCCCAAGGGCCGGATCGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACC 
ACCCTGACCCTCTCGGTGATCGCCGAGGCCCAGAAACAGGGCGCCACCTGTGCCTTCGTCGACGCCGAGCAC 
GCGCTCGATCCCGACTATGCCGGCAAGCTGGGCGTCAACGTCGACGACCTGCTGGTCTCCCAGCCGGACACC 
GGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCGGTCGACGTGATCATCGTCGACTCC 
GTGGCCGCGCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGACGCCCACGTCGGCCTGCAGGCACGC 
CTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAATATCAAGAACGCCAACTGCCTGGTCATCTTCATCAAC 
CAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCACTGAAGTTC 
TACGCCTCGGTCCGCCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTGGGTAGCGAA 
ACCCGCGTCAAGGTGGTGAAGAACAAGGTTTCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGC 
AAGGGCATCTACCGTACCGGCGAGATCATCGACCTGGGCGTGCAATTGGGCCTGGTCGAGAAGTCCGGCGCC 
TGGTACAGCTACCAGGGCAGCAAGATCGGCCAGGGCAAGGCGAACGCCGCCAAGTACCTGGAAGACAATCCG 
GAAATCGGTTCGGTACTGGAGAAGACCATCCGCGACCAGCTGCTGGCCAAGAGCGGTCCGGTGAAGGCCGAC 
GCCGAAGAAGTGGCTGACGCCGAAGCCGATTGA