ViewGene
Locus Name:
GeneID:
Location:

GeneID:2029
TrivialName: PA14_29560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29560
PAO1 Ortholog Locus:PA2670
Sequence Length:987
Protein Length:328
Start: 2563101
Stop: 2564087
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06058.1|AE004695_11 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 328/328 (100%)
Sequence:
TTGGCGCGGCGCGCCCCAGCGCAGTGGATCGTGGATCGGGCGTGGTGTGTCTATCGCTGTCTCGATCTCAAT
CATGTGCCGCGCTCTGACCGGTATCAGGCACTGGCGTTGAAGCTTGCCGCCCTGGCGCCTTTTCGCCGCGCA
GGCCATTACGTAGCCTGGCGGGGTGGCCATGCTCTGGTCTGGTTCTGGGATGAGGAGGTCCGGGAGGCCGTT
GCCGAAGACTGCGTCGACCAACCTCGGCGTTATCGCTGTATCCCCGAATCCCTCCTGCAGGCTCCCCCTCGG
TCGGTCGCGGAAGGCGAGACGGTTCGGCTGCTTCGGGTTCGCTCCGGGCTGGATCTGCAGGTCTGGAGAGAT
GACTGCCTTGTCCTGAGCCATTTCTTTCCCAGCCCACCCCAGCCAGAACAATGGGTTCGGTTGCTCCGGGGG
CTGGCGGGAATACGCATTCCGGAGAGCCTGGTTGCCGAGCCTGGGGAAGCGCTGGGCCGTCCCTGGGCCGTT
CCGGCGGCGGAAGCAACGCTGCTGCGATGGGAGCGTTGGTTGCCGCATGGGCTCATAGCCACCCTGTTGCTG
GGATGCGGATTCAATCTGGGGGAAGGTTTGTCCTGGTGGTGGGCCGAGCGTGCGCTGCGAACGCAGTACGAC
CAGCTGAGCGGCCAGGTCTCGCCGATCCTCAGCGCACGCAACCAGGCCTTGCAGACCAATCGGATGGCCACG
GAGCTGGGGCGCGCTTTGCAGCATCGCTCGCAGGTGGCGCTGCTGGGACAGGTAGCGGAACTGTTGCCGAAG
GACAGTCGGTTGCTCGCCTGGCGCTATCGAGGCTCCGAGCTGGAGTTGCGGATTGGCACCGACAGTGTCGAC
CCGCGTCTCTATGTGAGGCGTTTCATGGAGTCGGGGAGTTTCGAAGATGTCAGGGTGGAACCTTCGCAGAGC
GAGGGGCTATCGCTGAGCCTGGTCCTGCGTACGCCGGGGGAGGGTGCCTGA
Translation:
MARRAPAQWIVDRAWCVYRCLDLNHVPRSDRYQALALKLAALAPFRRAGHYVAWRGGHALVWFWDEEVREAV
AEDCVDQPRRYRCIPESLLQAPPRSVAEGETVRLLRVRSGLDLQVWRDDCLVLSHFFPSPPQPEQWVRLLRG
LAGIRIPESLVAEPGEALGRPWAVPAAEATLLRWERWLPHGLIATLLLGCGFNLGEGLSWWWAERALRTQYD
QLSGQVSPILSARNQALQTNRMATELGRALQHRSQVALLGQVAELLPKDSRLLAWRYRGSELELRIGTDSVD
PRLYVRRFMESGSFEDVRVEPSQSEGLSLSLVLRTPGEGA*
AnnotationID:2038GeneID:2029
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2670
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14481




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2029
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3521
                           PA2670_tr
                           translation of PA2670
                           328
                           99.39
                           99.99
                           0
                           1731.0
     

     
     
107697
                           gb|AAG06058.1|AE004695_11
                           (AE004695) hypothetical protein PA2670 [Pseudomonas aeruginosa PAO1]
                           328
                           99.08
                           99.99
                           0
                           1729.0
     

     






      

          
GC ORFID: 45031How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2670Glimmer Score: 

          
Start: 2390825Stop: 2389839

          
Length: 987


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2670 translation of PA2670Homolog Bit Score 671.0

          
Other Homologs:  

          
GC ORF Sequence

           
TTGGCGCGGCGCGCCCCAGCGCAGTGGATCGTGGATCGGGCGTGGTGTGTCTATCGCTGTCTCGATCTCAAT 
CATGTGCCGCGCTCTGACCGGTATCAGGCACTGGCGTTGAAGCTTGCCGCCCTGGCGCCTTTTCGCCGCGCA 
GGCCATTACGTAGCCTGGCGGGGTGGCCATGCTCTGGTCTGGTTCTGGGATGAGGAGGTCCGGGAGGCCGTT 
GCCGAAGACTGCGTCGACCAACCTCGGCGTTATCGCTGTATCCCCGAATCCCTCCTGCAGGCTCCCCCTCGG 
TCGGTCGCGGAAGGCGAGACGGTTCGGCTGCTTCGGGTTCGCTCCGGGCTGGATCTGCAGGTCTGGAGAGAT 
GACTGCCTTGTCCTGAGCCATTTCTTTCCCAGCCCACCCCAGCCAGAACAATGGGTTCGGTTGCTCCGGGGG 
CTGGCGGGAATACGCATTCCGGAGAGCCTGGTTGCCGAGCCTGGGGAAGCGCTGGGCCGTCCCTGGGCCGTT 
CCGGCGGCGGAAGCAACGCTGCTGCGATGGGAGCGTTGGTTGCCGCATGGGCTCATAGCCACCCTGTTGCTG 
GGATGCGGATTCAATCTGGGGGAAGGTTTGTCCTGGTGGTGGGCCGAGCGTGCGCTGCGAACGCAGTACGAC 
CAGCTGAGCGGCCAGGTCTCGCCGATCCTCAGCGCACGCAACCAGGCCTTGCAGACCAATCGGATGGCCACG 
GAGCTGGGGCGCGCTTTGCAGCATCGCTCGCAGGTGGCGCTGCTGGGACAGGTAGCGGAACTGTTGCCGAAG 
GACAGTCGGTTGCTCGCCTGGCGCTATCGAGGCTCCGAGCTGGAGTTGCGGATTGGCACCGACAGTGTCGAC 
CCGCGTCTCTATGTGAGGCGTTTCATGGAGTCGGGGAGTTTCGAAGATGTCAGGGTGGAACCTTCGCAGAGC 
GAGGGGCTATCGCTGAGCCTGGTCCTGCGTACGCCGGGGGAGGGTGCCTGA