ViewGene

Locus Name:
GeneID:
Location:

GeneID:2028
TrivialName: PA14_30620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30620
PAO1 Ortholog Locus:PA2588
Sequence Length:1029
Protein Length:342
Start: 2653396
Stop: 2652368
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05976.1|AE004687_5 (AE004687) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 338/342 (98%), Positives = 340/342 (99%)
Sequence:
ATGAGCCCGTCCGAAAACATCCAGTACGATTTCGAGTGGCGACCACTCAACAACTACCTCGCCGTGCAACGC
ATCACGCCTCCGGACATGCGCCAGGGTTCGGCTGCCGAGCCGCGCCTGCCCAGCGAAGCGCTCTACGAGTGG
ATCGTGCTGAACGGGCGCTCCCCCCTGGAAGGCCTGAGCCTGGGGGAACACTACCGCCTTTCCGACTATGGC
GTCGCCGGGCTGGCGCTGCAGAGTGCTGGCACCGTGGGCGAAGCCTTGCAACTGATCAAGACCAACATGCTG
CTGTTCCGCAAGGACATCCGCGGGATCGCGGTGAGACGTTCCAGTTGCGACACCGTGGATGTGGATATCGAC
CTGCAGGACAAGCCGGACTGGCCGCAGTCGGCCCGGTTGTACCACGCCAACGTCCTGGCGTCGGCCGCCTAC
GCGGTGTTCCGCGACCTGCTGCTGGGCGATCTGGAACTGGTCCGCCTGCGCCTCCCGGAAAGGAACGGCGAC
GTGCGGGCATACGAGGAGTATTTCCGGGTGCCGGTGTATTTCGCCGGCGAAGGCATCACCTTCACCCTCCCC
GAGGAATTGCTCGAGGCCGAGATCGCCACTGCCAACTCCGCCGTGTTCCAGGCCTCGCTGGCGCTCGGCAGC
AAGGCTTTCAACACCCGCGTCACCCGCGAGATGGGCGGCTACCGCCAACGCATCGTGGCACTGCTGGAGGTG
CTGCAGGACCGCTACCCGAGCATCGCCTGGGTCGCCCGGCAATTGAAGGTCACCGAGCGGACGCTGCGCCGA
CGGCTCGCCGACGAGGGCACCAACTACCGGGAAGTGCTCGACCTGGTCCGCCACGACAGGGCGCGCCAACTG
CTGCGGGACGAGCGACTGCGCATCGAGGAAGTCGCCGAGAGGCTGGGCTACATGGATACCTCCAGTTTTCGC
CACGCCTTCCGCCGCTGGACGGGACAGTGCGCCAACGACTATCGCCAGACCCGCCTCGCCGGCAAGACCGCG
CAGCGCCAGGGCGAACGCTAG
Translation:
MSPSENIQYDFEWRPLNNYLAVQRITPPDMRQGSAAEPRLPSEALYEWIVLNGRSPLEGLSLGEHYRLSDYG
VAGLALQSAGTVGEALQLIKTNMLLFRKDIRGIAVRRSSCDTVDVDIDLQDKPDWPQSARLYHANVLASAAY
AVFRDLLLGDLELVRLRLPERNGDVRAYEEYFRVPVYFAGEGITFTLPEELLEAEIATANSAVFQASLALGS
KAFNTRVTREMGGYRQRIVALLEVLQDRYPSIAWVARQLKVTERTLRRRLADEGTNYREVLDLVRHDRARQL
LRDERLRIEEVAERLGYMDTSSFRHAFRRWTGQCANDYRQTRLAGKTAQRQGER*
AnnotationID:2037GeneID:2028
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:50
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2588
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70904.1|AE016734_8 (AE016794) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 356

 Score =  119 bits (298), Expect = 3e-26
 Identities = 88/270 (32%), Positives = 136/270 (50%), Gaps = 8/270 (2%)

Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  89.0% aligned
Score = 73.4 bits (179), Expect = 4e-14
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  98.8% aligned
Score = 70.6 bits (173), Expect = 2e-13
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Genomic Context:
Comment:
ReferenceID:4059
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21205
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33149
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2028_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2028

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3519 PA2588_tr translation of PA2588 342 98.83 99.41 0 1730.0
107695 gb|AAG05976.1|AE004687_5 (AE004687) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 342 98.83 99.41 0 1730.0
3520 PA2227_tr translation of PA2227 342 41.81 59.64 17 707.0
107696 gb|AAG05615.1|AE004649_6 (AE004649) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 342 41.81 59.64 17 707.0
GC ORFID: 45030How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2588Glimmer Score:
Start: 2300530Stop: 2301558
Length: 1029
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2588 translation of PA2588Homolog Bit Score 671.0
Other Homologs: t_PA2227 (ORF: BLASTX 278.0), t_PA2588 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCCGTCCGAAAACATCCAGTACGATTTCGAGTGGCGACCACTCAACAACTACCTCGCCGTGCAACGC
ATCACGCCTCCGGACATGCGCCAGGGTTCGGCTGCCGAGCCGCGCCTGCCCAGCGAAGCGCTCTACGAGTGG
ATCGTGCTGAACGGGCGCTCCCCCCTGGAAGGCCTGAGCCTGGGGGAACACTACCGCCTTTCCGACTATGGC
GTCGCCGGGCTGGCGCTGCAGAGTGCTGGCACCGTGGGCGAAGCCTTGCAACTGATCAAGACCAACATGCTG
CTGTTCCGCAAGGACATCCGCGGGATCGCGGTGAGACGTTCCAGTTGCGACACCGTGGATGTGGATATCGAC
CTGCAGGACAAGCCGGACTGGCCGCAGTCGGCCCGGTTGTACCACGCCAACGTCCTGGCGTCGGCCGCCTAC
GCGGTGTTCCGCGACCTGCTGCTGGGCGATCTGGAACTGGTCCGCCTGCGCCTCCCGGAAAGGAACGGCGAC
GTGCGGGCATACGAGGAGTATTTCCGGGTGCCGGTGTATTTCGCCGGCGAAGGCATCACCTTCACCCTCCCC
GAGGAATTGCTCGAGGCCGAGATCGCCACTGCCAACTCCGCCGTGTTCCAGGCCTCGCTGGCGCTCGGCAGC
AAGGCTTTCAACACCCGCGTCACCCGCGAGATGGGCGGCTACCGCCAACGCATCGTGGCACTGCTGGAGGTG
CTGCAGGACCGCTACCCGAGCATCGCCTGGGTCGCCCGGCAATTGAAGGTCACCGAGCGGACGCTGCGCCGA
CGGCTCGCCGACGAGGGCACCAACTACCGGGAAGTGCTCGACCTGGTCCGCCACGACAGGGCGCGCCAACTG
CTGCGGGACGAGCGACTGCGCATCGAGGAAGTCGCCGAGAGGCTGGGCTACATGGATACCTCCAGTTTTCGC
CACGCCTTCCGCCGCTGGACGGGACAGTGCGCCAACGACTATCGCCAGACCCGCCTCGCCGGCAAGACCGCG
CAGCGCCAGGGCGAACGCTAG