ViewGene
Locus Name:
GeneID:
Location:

GeneID:2027
TrivialName: PA14_34770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34770
PAO1 Ortholog Locus:PA2309
Sequence Length:1023
Protein Length:340
Start: 3087301
Stop: 3088323
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05697.1|AE004657_4 (AE004657) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/340 (100%), Positives = 340/340 (100%)
Sequence:
ATGAACCGCATTCCCCGTTTCACCCGCCTGGTCGCCGCGCTCGGCCTGGGCCTGAGCCTCGCCACCACGCTG
CTGGCCAGCCGGCCGGCGCAGGCCGAGGGCGAGATCCGCATCGCCGAGCAGTTCGGCATCGTCTACCTGCTG
CTCAACGTGGTCCGCGACCAGCGCCTGATCGAAAAGCACGGCCAGGCCGAGGGCCTGCAAATCAAGGTCGAC
TGGACCCAACTGTCCGGCGGCGCGGCGGTCAACGATGCGCTGCTGTCCGGGGCGATCGATATCGCCGGTGCC
GGCGTCGGTCCGCTGCTGACCATCTGGGACCGTACCCGCGGGCGCCAGAACGTCAAGGCGGTGGCCTCGCTG
GGCAACTTCCCCTACTACCTGCTGAGCAACGACCCGCGGGTCAGGAGCATCGCCGACTTCGGCGCCGGGGAT
CGCATCGCCGTGCCGGCGGTGGGGGTTTCGGTGCAGTCGCGCTTCCTCCAGTACGCCGCGGCGAAGCAGTGG
GGCGACAAGCAGTTCGACCGCCTCGACAAGTACACCGTGGCGCTGCCGCACCCGGACGCCACCGCCGCGCTG
GTGGCCGGCGGCACCGAGCTGACCGGGCATTTCTCCAACCCGCCGTTCCAGGACCAGGCGCTGGCCAACCCG
AAGGTCCACGTGGTGCTCGACAGCTACGAGCTGTTGGGGCCGAATTCGCCGACCGTGCTGTTCGCCACGGAG
AAGTTCCGCCAGGACAACCCGAAGACCTACCGGGCCTTCGTCGAGGCGCTGAAGGAAGCGGCGGCCTTCGCC
CAGAACGACAAGGCGGCGGCCGCCGATACCTATATCCGGGTGACCGGGGCGAAGATCGACCGCGCCGCGCTG
CTGAAGATCATCGCCAATCCGCAGGTGGAGTTCAGCGTCACGCCGAAGAACACCTATCCGCTGGCGGAGTTC
CTCTACCGGGTCGGTGCGATCCGCAACAAGCCGGCTTCCTGGCAGGACTATTTCTTCCAGGACGGCGCGCCG
TTGCAGGGGAGTTGA
Translation:
MNRIPRFTRLVAALGLGLSLATTLLASRPAQAEGEIRIAEQFGIVYLLLNVVRDQRLIEKHGQAEGLQIKVD
WTQLSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTRGRQNVKAVASLGNFPYYLLSNDPRVRSIADFGAGD
RIAVPAVGVSVQSRFLQYAAAKQWGDKQFDRLDKYTVALPHPDATAALVAGGTELTGHFSNPPFQDQALANP
KVHVVLDSYELLGPNSPTVLFATEKFRQDNPKTYRAFVEALKEAAAFAQNDKAAAADTYIRVTGAKIDRAAL
LKIIANPQVEFSVTPKNTYPLAEFLYRVGAIRNKPASWQDYFFQDGAPLQGS*
AnnotationID:2036GeneID:2027
AnnotatorUID: diggins
Modification Date/Time: 2004-06-07 15:03:24
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, periplasmic binding protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55993.1| (AE016864) ABC transporter, periplasmic substrate-binding protein,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 345

 Score =  535 bits (1379), Expect = e-151
 Identities = 261/338 (77%), Positives = 302/338 (89%), Gaps = 1/338 (0%)

>emb|CAE35361.1| (BX640452) putative periplasmic protein [Bordetella bronchiseptica]
          Length = 347

 Score =  450 bits (1157), Expect = e-126
 Identities = 230/338 (68%), Positives = 272/338 (80%), Gaps = 3/338 (0%)

>gb|AAM35717.1| (AE011714) ABC transporter substrate binding protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 338

 Score =  396 bits (1017), Expect = e-109
 Identities = 206/337 (61%), Positives = 256/337 (75%), Gaps = 5/337 (1%)






 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
[Inorganic ion transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:4057




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32481




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2027_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2027
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3518
                           PA2309_tr
                           translation of PA2309
                           340
                           99.99
                           99.99
                           0
                           1731.0
     

     
     
107684
                           gb|AAG05697.1|AE004657_4
                           (AE004657) hypothetical protein PA2309 [Pseudomonas aeruginosa PAO1]
                           340
                           99.99
                           99.99
                           0
                           1731.0
     

     
     
107686
                           gb|AAN65803.1|AE016209_2
                           (AE016774) ABC transporter, periplasmic binding protein [Pseudomonas putida KT2440]
                           341
                           77.12
                           88.85
                           3
                           1365.0
     

     
     
107685
                           gb|AAO55993.1|
                           (AE016864) ABC transporter, periplasmic substrate-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           345
                           75.94
                           88.40
                           5
                           1377.0
     

     
     
107687
                           emb|CAE35361.1|
                           (BX640452) putative periplasmic protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           350
                           65.71
                           78.28
                           13
                           1156.0
     

     






      

          
GC ORFID: 45029How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2309Glimmer Score: 

          
Start: 1866615Stop: 1865593

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2309 translation of PA2309Homolog Bit Score 671.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3251 (ORF: BLASTX 363.0), t_PA2309 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGCATTCCCCGTTTCACCCGCCTGGTCGCCGCGCTCGGCCTGGGCCTGAGCCTCGCCACCACGCTG 
CTGGCCAGCCGGCCGGCGCAGGCCGAGGGCGAGATCCGCATCGCCGAGCAGTTCGGCATCGTCTACCTGCTG 
CTCAACGTGGTCCGCGACCAGCGCCTGATCGAAAAGCACGGCCAGGCCGAGGGCCTGCAAATCAAGGTCGAC 
TGGACCCAACTGTCCGGCGGCGCGGCGGTCAACGATGCGCTGCTGTCCGGGGCGATCGATATCGCCGGTGCC 
GGCGTCGGTCCGCTGCTGACCATCTGGGACCGTACCCGCGGGCGCCAGAACGTCAAGGCGGTGGCCTCGCTG 
GGCAACTTCCCCTACTACCTGCTGAGCAACGACCCGCGGGTCAGGAGCATCGCCGACTTCGGCGCCGGGGAT 
CGCATCGCCGTGCCGGCGGTGGGGGTTTCGGTGCAGTCGCGCTTCCTCCAGTACGCCGCGGCGAAGCAGTGG 
GGCGACAAGCAGTTCGACCGCCTCGACAAGTACACCGTGGCGCTGCCGCACCCGGACGCCACCGCCGCGCTG 
GTGGCCGGCGGCACCGAGCTGACCGGGCATTTCTCCAACCCGCCGTTCCAGGACCAGGCGCTGGCCAACCCG 
AAGGTCCACGTGGTGCTCGACAGCTACGAGCTGTTGGGGCCGAATTCGCCGACCGTGCTGTTCGCCACGGAG 
AAGTTCCGCCAGGACAACCCGAAGACCTACCGGGCCTTCGTCGAGGCGCTGAAGGAAGCGGCGGCCTTCGCC 
CAGAACGACAAGGCGGCGGCCGCCGATACCTATATCCGGGTGACCGGGGCGAAGATCGACCGCGCCGCGCTG 
CTGAAGATCATCGCCAATCCGCAGGTGGAGTTCAGCGTCACGCCGAAGAACACCTATCCGCTGGCGGAGTTC 
CTCTACCGGGTCGGTGCGATCCGCAACAAGCCGGCTTCCTGGCAGGACTATTTCTTCCAGGACGGCGCGCCG 
TTGCAGGGGAGTTGA