ViewGene
Locus Name:
GeneID:
Location:

GeneID:2024
TrivialName: PA14_52690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52690
PAO1 Ortholog Locus:PA0897
Sequence Length:1023
Protein Length:340
Start: 4671234
Stop: 4670212
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04286.1|AE004524_3 (AE004524) arginine/ornithine succinyltransferase AII subunit [Pseudomonas aeruginosa PAO1]
Identities = 339/339 (100%), Positives = 339/339 (100%)
Sequence:
ATGATCGTACGTCCTGTTACCAGCGCCGACCTGCCGGCCCTGATCGAGCTGGCGCGCAGCACCGGCACCGGC
CTGACCACCCTGCCGGCCAACGAGCAGCGCCTGCAGCATCGCGTCAGTTGGGCCGAGAAGGCCTTCCGTGGC
GAGGCCGAACGCGGCGACGCCGACTACCTGTTCGTCCTCGAGGACGACGCCGGCAAGGTCGTCGGCATCTCC
GCCATCGCCGGAGCGGTAGGGCTTCGCGAACCCTGGTACAACTACCGGGTCGGCCTCACCGTGAGCGCCTCG
CAGGAACTCAACATCCATCGCGAGATCCCCACGCTGTTCCTGGCCAACGACCTGACCGGCAATTCCGAGCTG
TGCTCGCTGTTCCTCCACGCCGACCACCGCAGCGGCCTCAACGGCAAGCTGCTGTCGCGCGCGCGCTTCCTG
TTCATCGCCGAATTCCGCCACCTGTTCGGCGACAAGCTGATCGCCGAGATGCGCGGCATGTCCGACGAGGAG
GGGCGTTCGCCATTCTGGGAAAGCCTCGGCCGGCACTTCTTCAAGATGGAATTCTCCCAGGCCGACTACCTC
ACCGGGGTCGGCAACAAGGCCTTCATCGCCGAGCTGATGCCGAAGTTCCCGCTCTACACCTGCTTCCTCTCC
GAGGAGGCGCGCGGGGTGATTGGCCGCGTCCATCCGAACACCGAGCCGGCGTTGGCCATGCTCAAGGCCGAG
GGCTTCAGCTACCAGGGCTACGTCGACATCTTCGACGCCGGCCCGGCGATCGAGGCCGAGACCGACAAGATC
CGCGCCATCGCCGAGAGCCAGAACCTGGTGCTGGCGGTGGGCACTCCCGGCGACGACGCCGAGCCCTACCTG
ATCCACAACCGCAAGCGCGAAGACTGTCGCATCACCGCCGCGCCGGCGCGGGCCGCCGCCGGCACCCTGGTG
GTCGATCCGCTGACCGCCAAGCGCCTGCGCCTGTCGGCCGGCGCCTCGGTACGCGCGGTGCCGCTGTCGGCG
CAGAAGCGCGCTTGA
Translation:
MIVRPVTSADLPALIELARSTGTGLTTLPANEQRLQHRVSWAEKAFRGEAERGDADYLFVLEDDAGKVVGIS
AIAGAVGLREPWYNYRVGLTVSASQELNIHREIPTLFLANDLTGNSELCSLFLHADHRSGLNGKLLSRARFL
FIAEFRHLFGDKLIAEMRGMSDEEGRSPFWESLGRHFFKMEFSQADYLTGVGNKAFIAELMPKFPLYTCFLS
EEARGVIGRVHPNTEPALAMLKAEGFSYQGYVDIFDAGPAIEAETDKIRAIAESQNLVLAVGTPGDDAEPYL
IHNRKREDCRITAAPARAAAGTLVVDPLTAKRLRLSAGASVRAVPLSAQKRA*
AnnotationID:2033GeneID:2024
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:23
Gene Name:aruG
Confidence Code:1
GeneProduct:arginine/ornithine succinyltransferase AII subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04958, COG3138
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Score: 506, 2e-144
COG3138, AstA, Arginine/ornithine N-succinyltransferase beta subunit. Score: 494, 1e-140






   
Genomic Context:
Arginine/ornithine catabolic locus, adjacent to arginine/ornithine transport locus






   
Comment:


















    ReferenceID:4051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16986




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0897_CDS.cgi


    		




 
URL:

















    ReferenceID:21197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32005




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2024
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3514
                           PA0897_tr
                           translation of PA0897
                           340
                           99.70
                           99.70
                           0
                           1732.0
     

     
     
107567
                           gb|AAG04286.1|AE004524_3
                           (AE004524) arginine/ornithine succinyltransferase AII subunit [Pseudomonas aeruginosa PAO1]
                           340
                           99.70
                           99.70
                           0
                           1732.0
     

     
     
107568
                           gb|AAC46011.1|
                           (AF011922) arginine/ornithine succinyltransferase AII subunit [Pseudomonas aeruginosa]
                           340
                           99.70
                           99.70
                           0
                           1732.0
     

     
     
107569
                           gb|AAN70054.1|AE016644_8
                           (AE016790) arginine N-succinyltransferase, beta subunit [Pseudomonas putida KT2440]
                           342
                           85.38
                           91.52
                           2
                           1499.0
     

     
     
107570
                           gb|AAO55353.1|
                           (AE016862) arginine N-succinyltransferase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           84.75
                           90.61
                           1
                           1488.0
     

     






      

          
GC ORFID: 45026How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0897Glimmer Score: 

          
Start: 282673Stop: 283695

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0897 translation of PA0897Homolog Bit Score 671.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7818 (ORF: BLASTX 577.0), t_PA0897 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGTACGTCCTGTTACCAGCGCCGACCTGCCGGCCCTGATCGAGCTGGCGCGCAGCACCGGCACCGGC 
CTGACCACCCTGCCGGCCAACGAGCAGCGCCTGCAGCATCGCGTCAGTTGGGCCGAGAAGGCCTTCCGTGGC 
GAGGCCGAACGCGGCGACGCCGACTACCTGTTCGTCCTCGAGGACGACGCCGGCAAGGTCGTCGGCATCTCC 
GCCATCGCCGGAGCGGTAGGGCTTCGCGAACCCTGGTACAACTACCGGGTCGGCCTCACCGTGAGCGCCTCG 
CAGGAACTCAACATCCATCGCGAGATCCCCACGCTGTTCCTGGCCAACGACCTGACCGGCAATTCCGAGCTG 
TGCTCGCTGTTCCTCCACGCCGACCACCGCAGCGGCCTCAACGGCAAGCTGCTGTCGCGCGCGCGCTTCCTG 
TTCATCGCCGAATTCCGCCACCTGTTCGGCGACAAGCTGATCGCCGAGATGCGCGGCATGTCCGACGAGGAG 
GGGCGTTCGCCATTCTGGGAAAGCCTCGGCCGGCACTTCTTCAAGATGGAATTCTCCCAGGCCGACTACCTC 
ACCGGGGTCGGCAACAAGGCCTTCATCGCCGAGCTGATGCCGAAGTTCCCGCTCTACACCTGCTTCCTCTCC 
GAGGAGGCGCGCGGGGTGATTGGCCGCGTCCATCCGAACACCGAGCCGGCGTTGGCCATGCTCAAGGCCGAG 
GGCTTCAGCTACCAGGGCTACGTCGACATCTTCGACGCCGGCCCGGCGATCGAGGCCGAGACCGACAAGATC 
CGCGCCATCGCCGAGAGCCAGAACCTGGTGCTGGCGGTGGGCACTCCCGGCGACGACGCCGAGCCCTACCTG 
ATCCACAACCGCAAGCGCGAAGACTGTCGCATCACCGCCGCGCCGGCGCGGGCCGCCGCCGGCACCCTGGTG 
GTCGATCCGCTGACCGCCAAGCGCCTGCGCCTGTCGGCCGGCGCCTCGGTACGCGCGGTGCCGCTGTCGGCG 
CAGAAGCGCGCTTGA