ViewGene

Locus Name:
GeneID:
Location:

GeneID:2023
TrivialName: PA14_69090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69090
PAO1 Ortholog Locus:PA5232
Sequence Length:1074
Protein Length:357
Start: 6163115
Stop: 6162042
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08617.1|AE004935_14 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 356/357 (99%), Positives = 357/357 (100%)
Sequence:
ATGAAACAGGAAAGCAAACGGTGGCTGAGCCGTGCCCTGGTCGTGGCGGCGCTGCTCGGCGTAGGCGTGCTG
GTCTGGCAGGTATCGCGACCGACCGGCCTGGGCGAGGGATTCGCCAGCGGCAACGGACGCATCGAGGCCACC
GAGGTGGACGTGGCGGCCAAGCTTCCCGGGCGGGTCGCCGAGATCAAGGTCGACGAGGGCGACTTCGTCAAG
GCCGGCGAAATCGTCGCGCGGATGGATACCCAGGTGCTCGAGGCGCAGTTGGCCCAGGCCCAGGCCCAGGTG
CGCCAGGCGGAGAACGCCAAGCTCACCGCGACCTCGCTGGTGGCCCAGCGCGAGAGCGAGAAGAGCACCGCC
CAGGCCGTGGTGGCGCAGCGCCAGGCCGAGCTGACAGCGGCGCAGAAGCGCTTCACCCGTACCGAGGCGCTG
GTCAAGCGCAATGCCCTGCCGCAACAGCAACTCGACGACGATCGGGCGACCCTGCAGAGCGCCCAGGCGGCG
TTGTCCGCGGCACGCTCGCAAGTGATTTCGGCGCAGGCGGCGATCGAGGCCGGGCGTTCCCAGGTAATCGAG
GCGCAGTCGGCCATCGAGGCGGCCAAGGCCAGCGTCGCCCGGCTCCAGGCGGATATCGACGACAGCCTGCTC
AAGGCGCCGCGCAACGGCCGCGTGCAGTACCGCGTGGCACAGCCGGGGGAAGTGCTGCCGGCCGGTGGCAAG
CTGCTCAACATGGTCGACCTGGCCGACGTCTACATGACTTTCTTCCTGCCATCCATGCAGGCCGGCAGGGTC
GGACTGGGCCAGGAAGTGCGCTTGGTGATCGACGCGGTGCCGGACTACGTGATCCCGGCCAAGGTTTCCTAT
GTCGCCAGCGTCGCCCAGTTCACCCCGAAAACGGTGGAAACCGCCAACGAGCGGGAGAAGCTGATGTTCCGG
GTCAAGGCGCGGCTCGATCCGGCGCTGCTGGAAAAATACATCACCTACGTCAAGACCGGCGTGCCCGGAATG
GCCTACCTGCGACTGGACCCTGAGGTCGAGTGGCCGGCCAACCTGCAGATCAAGGTTCCGCAATGA
Translation:
MKQESKRWLSRALVVAALLGVGVLVWQVSRPTGLGEGFASGNGRIEATEVDVAAKLPGRVAEIKVDEGDFVK
AGEIVARMDTQVLEAQLAQAQAQVRQAENAKLTATSLVAQRESEKSTAQAVVAQRQAELTAAQKRFTRTEAL
VKRNALPQQQLDDDRATLQSAQAALSAARSQVISAQAAIEAGRSQVIEAQSAIEAAKASVARLQADIDDSLL
KAPRNGRVQYRVAQPGEVLPAGGKLLNMVDLADVYMTFFLPSMQAGRVGLGQEVRLVIDAVPDYVIPAKVSY
VASVAQFTPKTVETANEREKLMFRVKARLDPALLEKYITYVKTGVPGMAYLRLDPEVEWPANLQIKVPQ*
AnnotationID:2032GeneID:2023
AnnotatorUID: diggins
Modification Date/Time: 2004-10-19 20:08:31
Gene Name:
Confidence Code:3
GeneProduct:putative membrane fusion protein
Cell Localization:()
Synonyms:yhiI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative HlyD family secretion protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4049
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21195
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34861
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2023_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2023

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3513 PA5232_tr translation of PA5232 357 99.71 99.99 0 1735.0
107545 gb|AAG08617.1|AE004935_14 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 357 99.71 99.99 0 1735.0
107546 emb|CAD85027.1| (BX321859) Type I antifreeze protein:HlyD family secretion protein [Nitrosomonas europaea ATCC 19718] 360 60.83 79.16 7 1099.0
107561 gb|AAR36059.1| (AE017216) HlyD family secretion protein [Geobacter sulfurreducens PCA] 357 57.70 73.94 0 997.0
107554 emb|CAE29529.1| (BX572606) probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps [Rhodopseudomonas palustris CGA009] 359 56.82 76.04 3 1022.0
GC ORFID: 45025How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5232Glimmer Score:
Start: 5426802Stop: 5425729
Length: 1074
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5232 translation of PA5232Homolog Bit Score 672.0
Other Homologs: t_PA5232 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACAGGAAAGCAAACGGTGGCTGAGCCGTGCCCTGGTCGTGGCGGCGCTGCTCGGCGTAGGCGTGCTG
GTCTGGCAGGTATCGCGACCGACCGGCCTGGGCGAGGGATTCGCCAGCGGCAACGGACGCATCGAGGCCACC
GAGGTGGACGTGGCGGCCAAGCTTCCCGGGCGGGTCGCCGAGATCAAGGTCGACGAGGGCGACTTCGTCAAG
GCCGGCGAAATCGTCGCGCGGATGGATACCCAGGTGCTCGAGGCGCAGTTGGCCCAGGCCCAGGCCCAGGTG
CGCCAGGCGGAGAACGCCAAGCTCACCGCGACCTCGCTGGTGGCCCAGCGCGAGAGCGAGAAGAGCACCGCC
CAGGCCGTGGTGGCGCAGCGCCAGGCCGAGCTGACAGCGGCGCAGAAGCGCTTCACCCGTACCGAGGCGCTG
GTCAAGCGCAATGCCCTGCCGCAACAGCAACTCGACGACGATCGGGCGACCCTGCAGAGCGCCCAGGCGGCG
TTGTCCGCGGCACGCTCGCAAGTGATTTCGGCGCAGGCGGCGATCGAGGCCGGGCGTTCCCAGGTAATCGAG
GCGCAGTCGGCCATCGAGGCGGCCAAGGCCAGCGTCGCCCGGCTCCAGGCGGATATCGACGACAGCCTGCTC
AAGGCGCCGCGCAACGGCCGCGTGCAGTACCGCGTGGCACAGCCGGGGGAAGTGCTGCCGGCCGGTGGCAAG
CTGCTCAACATGGTCGACCTGGCCGACGTCTACATGACTTTCTTCCTGCCATCCATGCAGGCCGGCAGGGTC
GGACTGGGCCAGGAAGTGCGCTTGGTGATCGACGCGGTGCCGGACTACGTGATCCCGGCCAAGGTTTCCTAT
GTCGCCAGCGTCGCCCAGTTCACCCCGAAAACGGTGGAAACCGCCAACGAGCGGGAGAAGCTGATGTTCCGG
GTCAAGGCGCGGCTCGATCCGGCGCTGCTGGAAAAATACATCACCTACGTCAAGACCGGCGTGCCCGGAATG
GCCTACCTGCGACTGGACCCTGAGGTCGAGTGGCCGGCCAACCTGCAGATCAAGGTTCCGCAATGA