ViewGene
Locus Name:
GeneID:
Location:

GeneID:2022
TrivialName: PA14_14220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14220
PAO1 Ortholog Locus:PA3849
Sequence Length:1005
Protein Length:334
Start: 1215719
Stop: 1214715
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07236.1|AE004802_5 (AE004802) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/334 (99%), Positives = 334/334 (100%)
Sequence:
ATGCCGATCCATCACGCCATCGTCCACCTGATCGAGAAGAAGCCCGACGGCACCCCGGCCGTGCTCCACGCG
CGCGACGCCGAGCTGGGCGACTCCCAGGCCATCGAGAACCTGCTGGCCGACCTCAACGAAAGCTACAACGCC
AAGAACAAGGCCTGGGGCTTCTTCCAGGGCGAGTCCGGGGCCTACCCGTTCAGCGGCTGGCTCGGCGAGTAC
CTGGAGGGCGACCGCGACTTCGTCGGCTTCAGCCGCGAAGCGGTCGAGCACCTGCAAAAGCTGATGGAGGAG
TCCAATCTCTCCACCGGCGGCCACGTCCTGTTCGCCCACTACCAGCAAGGCATGACCGACTACCTGGCGATC
GCCCTGCTGCACCACAGCGAAGGCGTGGCGGTGAACGAGTCGCTGGAGGTCACCCCGTCGCGCCACCTGGAC
CTCGGCCAGTTGCACCTGGCCGCGCGGATCAACATTTCCGAATGGCGCAACAACAAGCAGTCGAAGCAGTAC
ATCTCGTTCATCAAGGGCAAGGGCGGGAAGAAGGTCTCCGACTATTTCCGCGACTTCATCGGCTGCCAGGAA
GGGGTGGATTCGCCGAGCGAGACGCGCACCCTGCTGAAAGCCTTCAGCGATTTCGTGGAAAGCGAGGACATG
GCCGAGGAACAGGCCCGCGAGAAGACCGAGACGCTGGTCGACTACGCCACCTCCCAGGCGCGCATCGGCGAG
CCGATGACCCTCGACGCGCTTTCGGAACTGATGGACGACCAGCAACCGCGGGCGTTCTACGACTACATCCGT
AACAAGGACTACGGCCTGTCGCCGGAAATCCCGGCGGACAAGCGCACCCTCAACCAGTTCCGCCGCTTCACC
GGCCGCGCCGAAGGCCTGTCGATCAGCTTCGAGGCGCACCTGCTGGGCTCCAAGGTGGAATACGACGAAGAG
CGCGACATGCTGATCATCCGCCAGTTGCCGACCCAGTTGAAGGACCAGCTCAAGCGGCGCAAGGACTGA
Translation:
MPIHHAIVHLIEKKPDGTPAVLHARDAELGDSQAIENLLADLNESYNAKNKAWGFFQGESGAYPFSGWLGEY
LEGDRDFVGFSREAVEHLQKLMEESNLSTGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNESLEVTPSRHLD
LGQLHLAARINISEWRNNKQSKQYISFIKGKGGKKVSDYFRDFIGCQEGVDSPSETRTLLKAFSDFVESEDM
AEEQAREKTETLVDYATSQARIGEPMTLDALSELMDDQQPRAFYDYIRNKDYGLSPEIPADKRTLNQFRRFT
GRAEGLSISFEAHLLGSKVEYDEERDMLIIRQLPTQLKDQLKRRKD*
AnnotationID:2031GeneID:2022
AnnotatorUID: danlee
Modification Date/Time: 2005-09-27 17:05:20
Gene Name:
Confidence Code:4
GeneProduct:putative nucleoid-associated protein
Cell Localization:()
Synonyms:PA3849
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04245,COG3081
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54790.1| (AE016860) nucleoid-associated family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 333

 Score =  568 bits (1464), Expect = e-161
 Identities = 279/333 (83%), Positives = 303/333 (90%), Gaps = 1/333 (0%)

>gb|AAN66598.1|AE016287_9 (AE016777) nucleoid-associated protein, putative [Pseudomonas
           putida KT2440]
          Length = 335

 Score =  558 bits (1439), Expect = e-158
 Identities = 272/335 (81%), Positives = 301/335 (89%), Gaps = 1/335 (0%)







 
Structural Features:
pfam04245, NA37, 37-kD nucleoid-associated bacterial protein.
CD-Length = 330 residues, 100.0% aligned
Score =  509 bits (1313), Expect = 3e-145
Identities = 183/333 (54%), Positives = 244/333 (73%), Gaps = 3/333 (0%)

COG3081, Nucleoid-associated protein 
CD-Length = 335 residues,  98.5% aligned
Score =  487 bits (1254), Expect = 2e-138
Identities = 134/334 (40%), Positives = 202/334 (60%), Gaps = 4/334 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4047




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21193




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31713




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2022_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2022
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3512
                           PA3849_tr
                           translation of PA3849
                           334
                           99.70
                           99.99
                           0
                           1733.0
     

     
     
107538
                           gb|AAG07236.1|AE004802_5
                           (AE004802) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           334
                           99.70
                           99.99
                           0
                           1733.0
     

     
     
107539
                           gb|AAP84229.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           338
                           95.85
                           97.04
                           4
                           1683.0
     

     
     
107540
                           gb|AAO54790.1|
                           (AE016860) nucleoid-associated family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           335
                           83.28
                           90.44
                           3
                           1466.0
     

     
     
107541
                           dbj|BAC41613.1|
                           (AB088420) hypothetical protein [Pseudomonas resinovorans]
                           335
                           81.79
                           90.14
                           3
                           1449.0
     

     






      

          
GC ORFID: 45024How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3849Glimmer Score: 

          
Start: 3738219Stop: 3739223

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3849 translation of PA3849Homolog Bit Score 672.0

          
Other Homologs:  t_RL104 (ORF: BLASTX 651.0), psyr_15may02_Scaffold3_revised_gene4978 (ORF: BLASTX 566.0), t_PA3849 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGATCCATCACGCCATCGTCCACCTGATCGAGAAGAAGCCCGACGGCACCCCGGCCGTGCTCCACGCG 
CGCGACGCCGAGCTGGGCGACTCCCAGGCCATCGAGAACCTGCTGGCCGACCTCAACGAAAGCTACAACGCC 
AAGAACAAGGCCTGGGGCTTCTTCCAGGGCGAGTCCGGGGCCTACCCGTTCAGCGGCTGGCTCGGCGAGTAC 
CTGGAGGGCGACCGCGACTTCGTCGGCTTCAGCCGCGAAGCGGTCGAGCACCTGCAAAAGCTGATGGAGGAG 
TCCAATCTCTCCACCGGCGGCCACGTCCTGTTCGCCCACTACCAGCAAGGCATGACCGACTACCTGGCGATC 
GCCCTGCTGCACCACAGCGAAGGCGTGGCGGTGAACGAGTCGCTGGAGGTCACCCCGTCGCGCCACCTGGAC 
CTCGGCCAGTTGCACCTGGCCGCGCGGATCAACATTTCCGAATGGCGCAACAACAAGCAGTCGAAGCAGTAC 
ATCTCGTTCATCAAGGGCAAGGGCGGGAAGAAGGTCTCCGACTATTTCCGCGACTTCATCGGCTGCCAGGAA 
GGGGTGGATTCGCCGAGCGAGACGCGCACCCTGCTGAAAGCCTTCAGCGATTTCGTGGAAAGCGAGGACATG 
GCCGAGGAACAGGCCCGCGAGAAGACCGAGACGCTGGTCGACTACGCCACCTCCCAGGCGCGCATCGGCGAG 
CCGATGACCCTCGACGCGCTTTCGGAACTGATGGACGACCAGCAACCGCGGGCGTTCTACGACTACATCCGT 
AACAAGGACTACGGCCTGTCGCCGGAAATCCCGGCGGACAAGCGCACCCTCAACCAGTTCCGCCGCTTCACC 
GGCCGCGCCGAAGGCCTGTCGATCAGCTTCGAGGCGCACCTGCTGGGCTCCAAGGTGGAATACGACGAAGAG 
CGCGACATGCTGATCATCCGCCAGTTGCCGACCCAGTTGAAGGACCAGCTCAAGCGGCGCAAGGACTGA