ViewGene
Locus Name:
GeneID:
Location:

GeneID:202
TrivialName: PA14_49940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49940
PAO1 Ortholog Locus:PA1115
Sequence Length:2325
Protein Length:774
Start: 4439630
Stop: 4441954
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04504.1|AE004541_9 (AE004541) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 768/774 (99%), Positives = 769/774 (99%)
Sequence:
GTGCGTCCACTCAGCCGTTGGCTCTCATCTTGCGGCTCGCTTCTGGCGCTGGCCGCGCTGTTCCTGGTCGTT
CCCCTCGCCGGCCGCTACTGGCTCGGCTGGTCGACGCCGTTCGGCTATCTCTCGGACCTGGCCCTCGGCAGC
CTGCTGGTGCTGCTCCTGCATCGACGCTCCCTGTGGTTCGCGCTCCCGGTCATGCTGCTCTGGTGCCTGTTC
CTGATCGGCAATGCCGAACTGGTCGGCGCGGTCGGGCGCATGCCGGAGCCTTCCGACCTCAAGTACCTGCTG
GATCCGCAGTTCGTCAGCAGCTCCACCCAGGGCGGCGGCCTCGCCCACCTGCCACTGGCGCTCGGCCTCGGC
GGCGCGACATTGCTTTGCGTGCTGCTCTGGCGCCGCCGCGGTCCGCGCCTGCCGCGCTATGCCTACGCGCTG
CCGGCGGCGTTCCTGGCGGCGCATGTCGGCCTGCAATACCTGCGTCCGAGCGATGCCGACCAGTGGCAGCAG
TACAACCTGCCGCACAAACTGCTGGCCAGCGCGCTCAGCAGTGGCCAACTGGCGGTCGAAGACTGGCTCGCC
GGCGACCGTCCGGACACCCCGCCGGACGTCGCCGGGCTCAACCAGCTCGACCTTTCCGGAACGCCGCTGCTG
GCCGGCGGAGGGCGCGCGCGCAACGTCCTGATCGTGGCCATGGAGGGAATCCCCGGCGCGTATATCGCCGCC
AACCGCGCCGCCATCAACAGCAGCTACCACGAAGCGCCGATGCCCAGGCTGAGTGGCTGGGCCGAACGGGCG
ATGACCACCCCGGACTACGTGCTGCACAGCCACCAGACCATCCGCGGCCTCTACGCCATGCTCTGCGGCGAC
TACAGCAAGCTCGACTCGGGCACGCCGAAGGGCGTCGAGCTGCTCAACAACCCGGCCCGGGCCAGGGAGTGC
CTGCCCGCCCAGCTGCGCCAGCACGGTTTCAGCACGCACTTCCTGCAGGGTGCCGGCCTGCGCTTCATGGCC
AAGGACAAGGTCATGCCGCAGATGGGCTTCGACAAGACCCTCGGGCGCGACTGGTTCCGCAACAAGTCCTAC
CTGGAGTTTCCCTGGGGCATGGACGACAAGGCCTTCTTCGAGGGCGCCGCGACCTACGTGAAGCAGCTGCGC
CAGCAGAAGAAACCCTGGATGCTGACCCTGCTCACCGTCGGCACCCACCAGCCCTACTCGGCGCCTGCCGAC
TACCTGGCCCGCTACCCGAACGCCAAGCAGGCCGCGGTGGCCTATCTCGACGACGCGATCGGCGCCTTCCTC
GCCGACCTGGAGAAACAGGGCGTGTTGCGCGACACCCTGGTGGTGCTCACTTCCGACGAGTCCCACGGTGTC
GACCAGGTGCGCCTCGCCTCGGCCTGGGGCTTCAACCTGGTGCTGGCACCGGAACAGGCGGCGCTGCCGCCG
ATCAAGAGCGGCGTCTACGGCCACGTCGACCTCGCCGCGTCCGTCCTCGACTATTTCGGCTACCGCGTGCCG
GCGGGGATTTCCGGGCGCTCGCTGTTCCGCGACTACGCCAGCGGTCGCGAAATGATGTCCTACACCAACGGC
ATGCTGCGCCACCACGACGGCAAGGCCACCTTCGTCGAGTGCGATTTCCAGCAGGTCTGCCGGCGCTACCGC
AGCGAGGGCTTCATCGCCGACGAAGCCGAGTTCCTCGGTCGCTTTAGCGGACGCCAGGCACGCCTGGTCAGC
CAGCGCGCCGCCGTCCTCGACCACTCCGTGCAACAGGCCGGCCAGTTGGGCCAGGAGTTCCAGTTCGCCACC
CACGAACGCATCCGCCTGAAGCCGGAAACCCACAACGACTGGACCGACAACCTGATCGGCGCGCAATACCTG
GAGATGCCGAAGAACAGCAGGACCACGGTCACCCTGAAGATCCGCGCCTTGCAGATGGACCGCAACGGCGCC
CGGGTGACGCTGAAGACCAAGGAGTTCGAACGCGACGTTCCCATACCGGTACCGGACATCCCGCGCCTGCTC
AAAGGCAAGCCGCTGGACATGAGCTTCACCTTCGACAACCCGGAAGCGCGCAAGGCCTTCTCCTTCCACTTG
CTCGCCGAGGGCCGCGGGATCATCGAGATCAGCGACTTCCACGTGGTCACGGCGGCCAACCCGGAACCCGTG
GAAAGCCGCAGCCAGGTCGCCGAAGCGGCGAAGGAACAGCCGCTGCTGAGCACCCTGAAAAGCCTGTTCGCC
AACCGCCCCGAAACCGAGGAAGCGGAACGCGCGGACGCCCCTCGGGAGCGCACCGTCATCCCCGAGCAGAAG
GCCCTGATCCTTTCGCACTGA
Translation:
MRPLSRWLSSCGSLLALAALFLVVPLAGRYWLGWSTPFGYLSDLALGSLLVLLLHRRSLWFALPVMLLWCLF
LIGNAELVGAVGRMPEPSDLKYLLDPQFVSSSTQGGGLAHLPLALGLGGATLLCVLLWRRRGPRLPRYAYAL
PAAFLAAHVGLQYLRPSDADQWQQYNLPHKLLASALSSGQLAVEDWLAGDRPDTPPDVAGLNQLDLSGTPLL
AGGGRARNVLIVAMEGIPGAYIAANRAAINSSYHEAPMPRLSGWAERAMTTPDYVLHSHQTIRGLYAMLCGD
YSKLDSGTPKGVELLNNPARARECLPAQLRQHGFSTHFLQGAGLRFMAKDKVMPQMGFDKTLGRDWFRNKSY
LEFPWGMDDKAFFEGAATYVKQLRQQKKPWMLTLLTVGTHQPYSAPADYLARYPNAKQAAVAYLDDAIGAFL
ADLEKQGVLRDTLVVLTSDESHGVDQVRLASAWGFNLVLAPEQAALPPIKSGVYGHVDLAASVLDYFGYRVP
AGISGRSLFRDYASGREMMSYTNGMLRHHDGKATFVECDFQQVCRRYRSEGFIADEAEFLGRFSGRQARLVS
QRAAVLDHSVQQAGQLGQEFQFATHERIRLKPETHNDWTDNLIGAQYLEMPKNSRTTVTLKIRALQMDRNGA
RVTLKTKEFERDVPIPVPDIPRLLKGKPLDMSFTFDNPEARKAFSFHLLAEGRGIIEISDFHVVTAANPEPV
ESRSQVAEAAKEQPLLSTLKSLFANRPETEEAERADAPRERTVIPEQKALILSH*
AnnotationID:212GeneID:202
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 14:02:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1115
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase 
superfamily [Cell envelope biogenesis, outer membrane]
             CD-Length = 650 residues, 100.0% aligned
             Score =  218 bits (557), Expect = 2e-57






   
Genomic Context:






   
Comment:


















    ReferenceID:14085




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:202
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
344
                           PA1115_tr
                           translation of PA1115
                           774
                           99.22
                           99.35
                           0
                           3999.0
     

     
     
21722
                           gb|AAG04504.1|AE004541_9
                           (AE004541) hypothetical protein PA1115 [Pseudomonas aeruginosa PAO1]
                           774
                           99.09
                           99.35
                           0
                           3996.0
     

     
     
21723
                           gb|AAN68460.1|AE016478_12
                           (AE016784) sulfatase domain protein, putative [Pseudomonas putida KT2440]
                           783
                           55.68
                           68.19
                           59
                           2227.0
     

     






      

          
GC ORFID: 43204How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1115Glimmer Score: 

          
Start: 514278Stop: 511954

          
Length: 2325


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1115 translation of PA1115Homolog Bit Score 1545.0

          
Other Homologs:  t_PA1115 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGTCCACTCAGCCGTTGGCTCTCATCTTGCGGCTCGCTTCTGGCGCTGGCCGCGCTGTTCCTGGTCGTT 
CCCCTCGCCGGCCGCTACTGGCTCGGCTGGTCGACGCCGTTCGGCTATCTCTCGGACCTGGCCCTCGGCAGC 
CTGCTGGTGCTGCTCCTGCATCGACGCTCCCTGTGGTTCGCGCTCCCGGTCATGCTGCTCTGGTGCCTGTTC 
CTGATCGGCAATGCCGAACTGGTCGGCGCGGTCGGGCGCATGCCGGAGCCTTCCGACCTCAAGTACCTGCTG 
GATCCGCAGTTCGTCAGCAGCTCCACCCAGGGCGGCGGCCTCGCCCACCTGCCACTGGCGCTCGGCCTCGGC 
GGCGCGACATTGCTTTGCGTGCTGCTCTGGCGCCGCCGCGGTCCGCGCCTGCCGCGCTATGCCTACGCGCTG 
CCGGCGGCGTTCCTGGCGGCGCATGTCGGCCTGCAATACCTGCGTCCGAGCGATGCCGACCAGTGGCAGCAG 
TACAACCTGCCGCACAAACTGCTGGCCAGCGCGCTCAGCAGTGGCCAACTGGCGGTCGAAGACTGGCTCGCC 
GGCGACCGTCCGGACACCCCGCCGGACGTCGCCGGGCTCAACCAGCTCGACCTTTCCGGAACGCCGCTGCTG 
GCCGGCGGAGGGCGCGCGCGCAACGTCCTGATCGTGGCCATGGAGGGAATCCCCGGCGCGTATATCGCCGCC 
AACCGCGCCGCCATCAACAGCAGCTACCACGAAGCGCCGATGCCCAGGCTGAGTGGCTGGGCCGAACGGGCG 
ATGACCACCCCGGACTACGTGCTGCACAGCCACCAGACCATCCGCGGCCTCTACGCCATGCTCTGCGGCGAC 
TACAGCAAGCTCGACTCGGGCACGCCGAAGGGCGTCGAGCTGCTCAACAACCCGGCCCGGGCCAGGGAGTGC 
CTGCCCGCCCAGCTGCGCCAGCACGGTTTCAGCACGCACTTCCTGCAGGGTGCCGGCCTGCGCTTCATGGCC 
AAGGACAAGGTCATGCCGCAGATGGGCTTCGACAAGACCCTCGGGCGCGACTGGTTCCGCAACAAGTCCTAC 
CTGGAGTTTCCCTGGGGCATGGACGACAAGGCCTTCTTCGAGGGCGCCGCGACCTACGTGAAGCAGCTGCGC 
CAGCAGAAGAAACCCTGGATGCTGACCCTGCTCACCGTCGGCACCCACCAGCCCTACTCGGCGCCTGCCGAC 
TACCTGGCCCGCTACCCGAACGCCAAGCAGGCCGCGGTGGCCTATCTCGACGACGCGATCGGCGCCTTCCTC 
GCCGACCTGGAGAAACAGGGCGTGTTGCGCGACACCCTGGTGGTGCTCACTTCCGACGAGTCCCACGGTGTC 
GACCAGGTGCGCCTCGCCTCGGCCTGGGGCTTCAACCTGGTGCTGGCACCGGAACAGGCGGCGCTGCCGCCG 
ATCAAGAGCGGCGTCTACGGCCACGTCGACCTCGCCGCGTCCGTCCTCGACTATTTCGGCTACCGCGTGCCG 
GCGGGGATTTCCGGGCGCTCGCTGTTCCGCGACTACGCCAGCGGTCGCGAAATGATGTCCTACACCAACGGC 
ATGCTGCGCCACCACGACGGCAAGGCCACCTTCGTCGAGTGCGATTTCCAGCAGGTCTGCCGGCGCTACCGC 
AGCGAGGGCTTCATCGCCGACGAAGCCGAGTTCCTCGGTCGCTTTAGCGGACGCCAGGCACGCCTGGTCAGC 
CAGCGCGCCGCCGTCCTCGACCACTCCGTGCAACAGGCCGGCCAGTTGGGCCAGGAGTTCCAGTTCGCCACC 
CACGAACGCATCCGCCTGAAGCCGGAAACCCACAACGACTGGACCGACAACCTGATCGGCGCGCAATACCTG 
GAGATGCCGAAGAACAGCAGGACCACGGTCACCCTGAAGATCCGCGCCTTGCAGATGGACCGCAACGGCGCC 
CGGGTGACGCTGAAGACCAAGGAGTTCGAACGCGACGTTCCCATACCGGTACCGGACATCCCGCGCCTGCTC 
AAAGGCAAGCCGCTGGACATGAGCTTCACCTTCGACAACCCGGAAGCGCGCAAGGCCTTCTCCTTCCACTTG 
CTCGCCGAGGGCCGCGGGATCATCGAGATCAGCGACTTCCACGTGGTCACGGCGGCCAACCCGGAACCCGTG 
GAAAGCCGCAGCCAGGTCGCCGAAGCGGCGAAGGAACAGCCGCTGCTGAGCACCCTGAAAAGCCTGTTCGCC 
AACCGCCCCGAAACCGAGGAAGCGGAACGCGCGGACGCCCCTCGGGAGCGCACCGTCATCCCCGAGCAGAAG 
GCCCTGATCCTTTCGCACTGA