ViewGene
Locus Name:
GeneID:
Location:

GeneID:2019
TrivialName: PA14_32420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32420
PAO1 Ortholog Locus:PA2491
Sequence Length:1020
Protein Length:339
Start: 2819974
Stop: 2820993
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05879.1|AE004676_11 (AE004676) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 338/339 (99%), Positives = 339/339 (100%)
Sequence:
ATGTCCCGAGTGATCCGTTTTCATCAGTTTGGCCCGCCAGAGGTCCTCAAATGCGAAGAGCTGCCGACCCCG
GCGCCGGCCGCAGGGGAAGTCCTGGTGCGTGTCCAGGCGATCGGCGTGAGCTGGAAGGATGTGCTCTGGCGT
CAGAACCTGGCCCCGGAGCAGGCTGCGCTGCCGTCCGGTCTCGGCTTCGAACTGGCCGGCGAGGTGCTGGCG
GTCGGCGCCGGCGTCGGCGACCTGCCGCTGGGTTCCCGCGTGGCCAGTTTCCCCGCCCATACCCCCGATCAT
TATCCGGCCTATGGCGACGTGGTGCTGATGCCGCGCGCGGCCCTGGCGGTCTACCCCGAGGTACTCACCCCG
GTGGAGGCCAGCGTCTACTACACCGGCCTGCTGGTGGCCTATTTCGGCCTGGTCGACCTGGCCGGGTTGAAG
GCTGGGCAGACCGTGCTGATCACCGAGGCGGCGCGCATGTACGGACCGGTCTCGATCCAGTTGGCCAAGGCT
CTCGGCGCGCGGGTGATCGCTTCCACCAAGTCCGCCGAGGAGCGCGAGTTCCTCCGCGAGCAGGGCGCCGAC
AAGGTGGTGGTGACCGACGAGCAGGACCTGGTCCTGGAAGTCGAGCGCTTCACCGAGGGCAAGGGCGTCAAT
GTCATCCTCGACGAATTGGGCGGCCCGCAGATGACCCTGCTCGGCGATGTCTCCGCCACCCGCGGCAAGCTG
GTGCTGTATGGCTGCAACGGCGGCAACGAGTCGGCGTTCCCGGCCTGCGCCGCGTTCAAGAAGCACCTGCAG
TTCTACCGCCACTGCCTGATGGATTTCACCGGTCATCCGGAGATGGGCCTGGAACGCAACGACGAGTCGGTG
AGCAAGGCCCTCGCGCACATCGAGCAACTGACCCGCGATCGCCTGCTCAAGCCGGTGGTCGACCGGGTATTC
GAGTTCGACCAGGTGGTCGAGGCGCACCGCTACATGGAAACCTGTCCGAAGCGCGGCCGGGTGGTGATCCAC
GTCGCCGATTGA
Translation:
MSRVIRFHQFGPPEVLKCEELPTPAPAAGEVLVRVQAIGVSWKDVLWRQNLAPEQAALPSGLGFELAGEVLA
VGAGVGDLPLGSRVASFPAHTPDHYPAYGDVVLMPRAALAVYPEVLTPVEASVYYTGLLVAYFGLVDLAGLK
AGQTVLITEAARMYGPVSIQLAKALGARVIASTKSAEEREFLREQGADKVVVTDEQDLVLEVERFTEGKGVN
VILDELGGPQMTLLGDVSATRGKLVLYGCNGGNESAFPACAAFKKHLQFYRHCLMDFTGHPEMGLERNDESV
SKALAHIEQLTRDRLLKPVVDRVFEFDQVVEAHRYMETCPKRGRVVIHVAD*
AnnotationID:2028GeneID:2019
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:42
Gene Name:
Confidence Code:3
GeneProduct:putative Zn-dependent oxidoreductase
Cell Localization:()
Synonyms:PA2491
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56529.1| (AE016866) alcohol dehydrogenase, zinc-containing [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 340

 Score =  424 bits (1089), Expect = e-118
 Identities = 204/337 (60%), Positives = 261/337 (77%)

>emb|CAD59443.1| (Y19106) putative quinone oxidoreductase [Pseudomonas putida]
          Length = 340

 Score =  421 bits (1081), Expect = e-117
 Identities = 197/338 (58%), Positives = 266/338 (78%)








 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues,  99.7% aligned
Score =  227 bits (581), Expect = 1e-60
Identities = 127/336 (37%), Positives = 170/336 (50%), Gaps = 12/336 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33032




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2019_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2019
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3509
                           PA2491_tr
                           translation of PA2491
                           339
                           99.70
                           99.99
                           0
                           1737.0
     

     
     
107517
                           gb|AAG05879.1|AE004676_11
                           (AE004676) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           339
                           99.70
                           99.99
                           0
                           1737.0
     

     
     
107518
                           gb|AAO56529.1|
                           (AE016866) alcohol dehydrogenase, zinc-containing [Pseudomonas syringae pv. tomato str. DC3000]
                           340
                           60.00
                           76.76
                           1
                           1087.0
     

     
     
107519
                           gb|AAN68435.1|AE016476_4
                           (AE016784) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           340
                           57.94
                           78.23
                           1
                           1081.0
     

     
     
107520
                           emb|CAD59443.1|
                           (Y19106) putative quinone oxidoreductase [Pseudomonas putida]
                           340
                           57.94
                           78.23
                           1
                           1081.0
     

     






      

          
GC ORFID: 45021How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2491Glimmer Score: 

          
Start: 2133950Stop: 2132931

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2491 translation of PA2491Homolog Bit Score 673.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7310 (ORF: BLASTX 374.0), t_PA2491 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGAGTGATCCGTTTTCATCAGTTTGGCCCGCCAGAGGTCCTCAAATGCGAAGAGCTGCCGACCCCG 
GCGCCGGCCGCAGGGGAAGTCCTGGTGCGTGTCCAGGCGATCGGCGTGAGCTGGAAGGATGTGCTCTGGCGT 
CAGAACCTGGCCCCGGAGCAGGCTGCGCTGCCGTCCGGTCTCGGCTTCGAACTGGCCGGCGAGGTGCTGGCG 
GTCGGCGCCGGCGTCGGCGACCTGCCGCTGGGTTCCCGCGTGGCCAGTTTCCCCGCCCATACCCCCGATCAT 
TATCCGGCCTATGGCGACGTGGTGCTGATGCCGCGCGCGGCCCTGGCGGTCTACCCCGAGGTACTCACCCCG 
GTGGAGGCCAGCGTCTACTACACCGGCCTGCTGGTGGCCTATTTCGGCCTGGTCGACCTGGCCGGGTTGAAG 
GCTGGGCAGACCGTGCTGATCACCGAGGCGGCGCGCATGTACGGACCGGTCTCGATCCAGTTGGCCAAGGCT 
CTCGGCGCGCGGGTGATCGCTTCCACCAAGTCCGCCGAGGAGCGCGAGTTCCTCCGCGAGCAGGGCGCCGAC 
AAGGTGGTGGTGACCGACGAGCAGGACCTGGTCCTGGAAGTCGAGCGCTTCACCGAGGGCAAGGGCGTCAAT 
GTCATCCTCGACGAATTGGGCGGCCCGCAGATGACCCTGCTCGGCGATGTCTCCGCCACCCGCGGCAAGCTG 
GTGCTGTATGGCTGCAACGGCGGCAACGAGTCGGCGTTCCCGGCCTGCGCCGCGTTCAAGAAGCACCTGCAG 
TTCTACCGCCACTGCCTGATGGATTTCACCGGTCATCCGGAGATGGGCCTGGAACGCAACGACGAGTCGGTG 
AGCAAGGCCCTCGCGCACATCGAGCAACTGACCCGCGATCGCCTGCTCAAGCCGGTGGTCGACCGGGTATTC 
GAGTTCGACCAGGTGGTCGAGGCGCACCGCTACATGGAAACCTGTCCGAAGCGCGGCCGGGTGGTGATCCAC 
GTCGCCGATTGA