ViewGene

Locus Name:
GeneID:
Location:

GeneID:2018
TrivialName: PA14_36100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36100
PAO1 Ortholog Locus:PA2212
Sequence Length:1014
Protein Length:337
Start: 3217799
Stop: 3216786
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05600.1|AE004647_9 (AE004647) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 336/337 (99%), Positives = 336/337 (99%)
Sequence:
ATGAACGCTCCATCCCTACCGCGACTGGCCATGGTCCTGGGCGATCCGGCCGGCATCGGCCCGGAACTGATC
GCCCGCCTGCTGGCCGACACCGAGGTGCGCGAGAAGGCGCACATCGTGCTGATCGCCGACGAAGCGGAAATG
CGCCGCGGCATGCGCATCGCCGGCTGCGAATTCCCCTACCGACGCATCGACGCCCTGGAGACCCTGGATTTC
GCCGACGCCACGCCATTGCTGCATCCCTGGCTCAGCCAGGGCGGGGACGAGTTCCCACGCAGCGAAGCGAGC
GCCGTCGGTGGCCGCTACAGCCTGGAAACCCTCGCGCTGGCCCTCGAACTGACCCGCAGCGGCAGGACCGAC
GCGATCCTCTTCGGCCCGCTGAACAAGACCTCGCTGCACATGGCCGGCATGGACCACAGCGACGAGTTGCAC
TGGTTCGCCGAGCGCCTGGGGTTCGGCGGCCCGTTCTGCGAGTTCAACGTCCTCGACGACCTCTGGACCTCG
CGGGTGACCTCCCACGTAGCCCTGGCCGAGGTGCCGGGCCTGCTCAGCCAGGAGCGGGTAGGGGAGGCGATC
CGCCTGATCGACGACGCGCTGCGCCGCAGCGGCCTGGCGCGGCCGCGCATCGGCGTCTGCGGACTGAACCCG
CACAACGGCGACAACGGCAGCTTCGGCCGCGAGGAGCTGGACATCATCGCTCCGGCGGTGCAGAAGGCGCGC
GAACAGGGGATCGCCGCCGACGGCCCGTATCCCGCCGACACCATTTTCCTCAAAGTGCAGGGCGACGCCCGT
GCCTTCGACGCGGTGGTGACCATGTACCACGACCAGGGGCAGATCGCGATCAAGCTGATGGGCTTCTCCCGC
GGCGTGACCGTCCAGGGCGGCCTGCCGATCCCCATCGCTACGCCGGCCCACGGTACCGCCTTCGATATCGCC
GGGCAGGGAAGGGCCGACGTCGGCGCCACCCGCCAGGCGTTCGAGATCGCCTGCCGGATGGGCAGACGCAAA
GCCTGA
Translation:
MNAPSLPRLAMVLGDPAGIGPELIARLLADTEVREKAHIVLIADEAEMRRGMRIAGCEFPYRRIDALETLDF
ADATPLLHPWLSQGGDEFPRSEASAVGGRYSLETLALALELTRSGRTDAILFGPLNKTSLHMAGMDHSDELH
WFAERLGFGGPFCEFNVLDDLWTSRVTSHVALAEVPGLLSQERVGEAIRLIDDALRRSGLARPRIGVCGLNP
HNGDNGSFGREELDIIAPAVQKAREQGIAADGPYPADTIFLKVQGDARAFDAVVTMYHDQGQIAIKLMGFSR
GVTVQGGLPIPIATPAHGTAFDIAGQGRADVGATRQAFEIACRMGRRKA*
AnnotationID:2027GeneID:2018
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 18:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative pyridoxal phosphate biosynthesis protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA2212
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1995,pfam04166
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC49639.1| (AP005951) pyridoxal phosphate biosynthesis protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 334

 Score =  311 bits (797), Expect = 4e-84
 Identities = 158/331 (47%), Positives = 212/331 (64%), Gaps = 2/331 (0%)

Structural Features:
COG1995, PdxA, Pyridoxal phosphate biosynthesis protein 
[Coenzyme metabolism]
CD-Length = 332 residues,  99.4% aligned
Score =  366 bits (940), Expect = 3e-102
Identities = 131/335 (39%), Positives = 186/335 (55%), Gaps = 6/335 (1%)

pfam04166, PdxA, Pyridoxal phosphate biosynthetic protein PdxA.
CD-Length = 299 residues, 100.0% aligned
Score =  326 bits (837), Expect = 2e-90
Identities = 131/310 (42%), Positives = 173/310 (55%), Gaps = 19/310 (6%)
Genomic Context:
Comment:
ReferenceID:4039
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21185
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32544
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2018_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2018

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3508 PA2212_tr translation of PA2212 337 99.70 99.70 0 1737.0
107510 gb|AAG05600.1|AE004647_9 (AE004647) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 337 99.70 99.70 0 1737.0
107511 dbj|BAC49639.1| (AP005951) pyridoxal phosphate biosynthesis protein [Bradyrhizobium japonicum USDA 110] 344 47.67 63.66 17 800.0
107513 gb|AAK03734.1| (AE006202) unknown [Pasteurella multocida] 347 44.09 59.65 20 732.0
107512 emb|CAC49864.1| (AL603647) putative pyridoxal phosphate biosynthetic protein [Sinorhizobium meliloti] 360 42.77 59.44 35 763.0
GC ORFID: 45020How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2212Glimmer Score:
Start: 1736117Stop: 1737130
Length: 1014
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2212 translation of PA2212Homolog Bit Score 673.0
Other Homologs: t_PA2212 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCTCCATCCCTACCGCGACTGGCCATGGTCCTGGGCGATCCGGCCGGCATCGGCCCGGAACTGATC
GCCCGCCTGCTGGCCGACACCGAGGTGCGCGAGAAGGCGCACATCGTGCTGATCGCCGACGAAGCGGAAATG
CGCCGCGGCATGCGCATCGCCGGCTGCGAATTCCCCTACCGACGCATCGACGCCCTGGAGACCCTGGATTTC
GCCGACGCCACGCCATTGCTGCATCCCTGGCTCAGCCAGGGCGGGGACGAGTTCCCACGCAGCGAAGCGAGC
GCCGTCGGTGGCCGCTACAGCCTGGAAACCCTCGCGCTGGCCCTCGAACTGACCCGCAGCGGCAGGACCGAC
GCGATCCTCTTCGGCCCGCTGAACAAGACCTCGCTGCACATGGCCGGCATGGACCACAGCGACGAGTTGCAC
TGGTTCGCCGAGCGCCTGGGGTTCGGCGGCCCGTTCTGCGAGTTCAACGTCCTCGACGACCTCTGGACCTCG
CGGGTGACCTCCCACGTAGCCCTGGCCGAGGTGCCGGGCCTGCTCAGCCAGGAGCGGGTAGGGGAGGCGATC
CGCCTGATCGACGACGCGCTGCGCCGCAGCGGCCTGGCGCGGCCGCGCATCGGCGTCTGCGGACTGAACCCG
CACAACGGCGACAACGGCAGCTTCGGCCGCGAGGAGCTGGACATCATCGCTCCGGCGGTGCAGAAGGCGCGC
GAACAGGGGATCGCCGCCGACGGCCCGTATCCCGCCGACACCATTTTCCTCAAAGTGCAGGGCGACGCCCGT
GCCTTCGACGCGGTGGTGACCATGTACCACGACCAGGGGCAGATCGCGATCAAGCTGATGGGCTTCTCCCGC
GGCGTGACCGTCCAGGGCGGCCTGCCGATCCCCATCGCTACGCCGGCCCACGGTACCGCCTTCGATATCGCC
GGGCAGGGAAGGGCCGACGTCGGCGCCACCCGCCAGGCGTTCGAGATCGCCTGCCGGATGGGCAGACGCAAA
GCCTGA