ViewGene
Locus Name:
GeneID:
Location:

GeneID:2016
TrivialName: PA14_20620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20620
PAO1 Ortholog Locus:PA3360
Sequence Length:1059
Protein Length:352
Start: 1774674
Stop: 1775732
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06748.1|AE004758_5 (AE004758) probable secretion protein [Pseudomonas aeruginosa PAO1]
Identities = 350/352 (99%), Positives = 351/352 (99%)
Sequence:
ATGACTCCCGATCAACGATTTGCCCGTTGGGTTCAAGTCGCTATCGCGGTATTCGTGTTGCTGTTCGTCTAC
TTCCTGGTCGCCGACCTGTGGATGCCGCTCACCCCGCAGGCCCAGTTGACCCGGCCGGTGGTGCGCGTCGCG
CCGCGTGTCAGCGGTCAGGTCGCCGAGGTGCTGGTGTCCAACAACGGCCACGTGCAGCCCGGCGAAGTGTTG
TTCCGCCTCGATCCAGAGCCGTTCCAACTGGCCGTGCGCCAGGCCGAACTGGCACTGGAGGAAGCCGAGCGC
ACCAACCGCGAGCTGGATGCCGCCATCGCCTCGGCCAAGGCCGACCTCCTGGCCGCGCGCAGCAGCGCCGGC
GAGCTGGACAGCGAGGCGCGCCGCACCGCCCAACTGGTGCAGCGCCACCATGTGTCGCAGCAGATGCACGAG
CAGGTCAGCGCCCAGGCCCAGGCCGCCCGTGCCCGGGTCGCCGCGGCCCAGGCGCGGATCGGCGAGCTGACC
GCGCGACGCGGCACGGCCGGCGAGGACAACCTGCGCCTGCGCCAGGCGCGTAACGCCCTGGCCCAGGCCCGT
CTGCAACTGCAATACAGCAGCGTCCGGGCCGACCGCGCCGGGACCCTGAGCAACCTGCAACTGACCCCGGGC
ACCTACGTTCCGGCCGGTACGCCGGTGGCGGCGCTGGTGGACGACCGCATCGACATCGTCGCCGACTTCCGC
GAGAAATCGCTGCGCTACGTGCGCCCTGGCGACCGTGCGGCGGTGGTGTTCGATGCGCGTCCCGGCGAAGTG
TTCGGCGCGCGGGTGGCGGCCATCGACGCCGGGGTCAAGGAGGGCCAGCTGGACGCCAACGGCGACCTCGCC
GCGCCGGTCACCTCCGACCGCTGGGTCCGCGACGCTCAGCGCCAGCGCCTGCACGTGGTGCTCGACGAACTT
CCCGAAGGCTTCCTGCCCACCGGTGCCAAGGCCACCGTGCAGCTGTATCCCGGCGACGGCCTGAGCCACCTG
CTCGGTCGCGCGCAGATCGTCGCCATCAGCCTGCTGCACTACGTCTACTGA
Translation:
MTPDQRFARWVQVAIAVFVLLFVYFLVADLWMPLTPQAQLTRPVVRVAPRVSGQVAEVLVSNNGHVQPGEVL
FRLDPEPFQLAVRQAELALEEAERTNRELDAAIASAKADLLAARSSAGELDSEARRTAQLVQRHHVSQQMHE
QVSAQAQAARARVAAAQARIGELTARRGTAGEDNLRLRQARNALAQARLQLQYSSVRADRAGTLSNLQLTPG
TYVPAGTPVAALVDDRIDIVADFREKSLRYVRPGDRAAVVFDARPGEVFGARVAAIDAGVKEGQLDANGDLA
APVTSDRWVRDAQRQRLHVVLDELPEGFLPTGAKATVQLYPGDGLSHLLGRAQIVAISLLHYVY*
AnnotationID:2025GeneID:2016
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 07:07:22
Gene Name:
Confidence Code:3
GeneProduct:putative HlyD family secretion protein
Cell Localization:()
Synonyms:PA3360
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1566
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN57025.1|AE015836_7 (AE015836) HlyD family secretion protein [Shewanella oneidensis
           MR-1]
          Length = 357

 Score =  355 bits (910), Expect = 3e-97
 Identities = 185/357 (51%), Positives = 249/357 (69%), Gaps = 5/357 (1%)

>dbj|BAC62561.1| (AP005088) putative secretion protein [Vibrio parahaemolyticus]
          Length = 351

 Score =  353 bits (907), Expect = 7e-97
 Identities = 180/352 (51%), Positives = 244/352 (69%), Gaps = 1/352 (0%)






 
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues,  96.0% aligned
Score =  221 bits (564), Expect = 1e-58
Identities = 113/341 (33%), Positives = 164/341 (48%), Gaps = 7/341 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4035




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32194




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2016_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2016
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3506
                           PA3360_tr
                           translation of PA3360
                           352
                           99.43
                           99.71
                           0
                           1738.0
     

     
     
107470
                           gb|AAG06748.1|AE004758_5
                           (AE004758) probable secretion protein [Pseudomonas aeruginosa PAO1]
                           352
                           99.43
                           99.71
                           0
                           1738.0
     

     
     
107471
                           gb|AAN57025.1|AE015836_7
                           (AE015836) HlyD family secretion protein [Shewanella oneidensis MR-1]
                           357
                           51.82
                           69.74
                           5
                           914.0
     

     
     
107472
                           dbj|BAC62561.1|
                           (AP005088) putative secretion protein [Vibrio parahaemolyticus]
                           352
                           51.13
                           69.31
                           1
                           909.0
     

     






      

          
GC ORFID: 45018How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3360Glimmer Score: 

          
Start: 3179258Stop: 3178200

          
Length: 1059


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3360 translation of PA3360Homolog Bit Score 674.0

          
Other Homologs:  t_PA3360 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCCCGATCAACGATTTGCCCGTTGGGTTCAAGTCGCTATCGCGGTATTCGTGTTGCTGTTCGTCTAC 
TTCCTGGTCGCCGACCTGTGGATGCCGCTCACCCCGCAGGCCCAGTTGACCCGGCCGGTGGTGCGCGTCGCG 
CCGCGTGTCAGCGGTCAGGTCGCCGAGGTGCTGGTGTCCAACAACGGCCACGTGCAGCCCGGCGAAGTGTTG 
TTCCGCCTCGATCCAGAGCCGTTCCAACTGGCCGTGCGCCAGGCCGAACTGGCACTGGAGGAAGCCGAGCGC 
ACCAACCGCGAGCTGGATGCCGCCATCGCCTCGGCCAAGGCCGACCTCCTGGCCGCGCGCAGCAGCGCCGGC 
GAGCTGGACAGCGAGGCGCGCCGCACCGCCCAACTGGTGCAGCGCCACCATGTGTCGCAGCAGATGCACGAG 
CAGGTCAGCGCCCAGGCCCAGGCCGCCCGTGCCCGGGTCGCCGCGGCCCAGGCGCGGATCGGCGAGCTGACC 
GCGCGACGCGGCACGGCCGGCGAGGACAACCTGCGCCTGCGCCAGGCGCGTAACGCCCTGGCCCAGGCCCGT 
CTGCAACTGCAATACAGCAGCGTCCGGGCCGACCGCGCCGGGACCCTGAGCAACCTGCAACTGACCCCGGGC 
ACCTACGTTCCGGCCGGTACGCCGGTGGCGGCGCTGGTGGACGACCGCATCGACATCGTCGCCGACTTCCGC 
GAGAAATCGCTGCGCTACGTGCGCCCTGGCGACCGTGCGGCGGTGGTGTTCGATGCGCGTCCCGGCGAAGTG 
TTCGGCGCGCGGGTGGCGGCCATCGACGCCGGGGTCAAGGAGGGCCAGCTGGACGCCAACGGCGACCTCGCC 
GCGCCGGTCACCTCCGACCGCTGGGTCCGCGACGCTCAGCGCCAGCGCCTGCACGTGGTGCTCGACGAACTT 
CCCGAAGGCTTCCTGCCCACCGGTGCCAAGGCCACCGTGCAGCTGTATCCCGGCGACGGCCTGAGCCACCTG 
CTCGGTCGCGCGCAGATCGTCGCCATCAGCCTGCTGCACTACGTCTACTGA