ViewGene

Locus Name:
GeneID:
Location:

GeneID:2014
TrivialName: PA14_29180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29180
PAO1 Ortholog Locus:PA2704
Sequence Length:1020
Protein Length:339
Start: 2523048
Stop: 2524067
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06092.1|AE004698_8 (AE004698) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 338/339 (99%), Positives = 338/339 (99%)
Sequence:
ATGATCGATTCGACCTTCTCCCGCGCCACCTGGCTCAACTCGCTGCACATGTCGACCCTCACTCTCTCGCTG
CTGGAGAAGGAAGGGTTCGCCCGCGAGCAACTGCTCGAAGGCAGTGGCATCACCCCCGCCGACCTGCTCGAC
CTGCGGCGCCTGATCAGCCCCTGGCAGGAGCAGCAGGTGTTCGCCAACGCCTGCCGGCTCAGCGACGAGCCG
GCCCTCGGCCTGCGCCTGGGGCTGCGCACGCGGATTTCCGCCTACGGCCTGCTCGGCTACGCGCTGCTCTCC
GCGCCGACCCTCGGCGAGGCGCTGCGCATCGGCCTCAGCTATCCGGTCTTGCTCGGCACCTACTTCCACCTG
TCGCTGGAAGTCGCCGACGGCCGCGCCTGGCTGGTGGCCACCGGCTACGGCGAGGACGAGGCGCTGCGGCCA
TTCAACACCGAGCTTTGCCTGGGCTCGCTGAAGGTCACCTGCGCCGACCTGCTCGGCCAGCCGCTGCCCTTG
CTGGAAGCGGCCTTCGACTATGCCGGCGACGAGGCGATGGTGCGGGCCTACGCCGAGGGTTTCGCCTGCGAG
TTGCACTTCGAACGCGAGCGCAGCGCCATCGGCTTCGCCGCCGAATGGCTGGAGCGCCCGTTGCCGCTGGCC
GACCCGGTGACCCACCGGGAGATGCTGGAACAGTGCCGGCGGCAGAACATCGACCTGGCCGCGCGTCGTGCC
TGGCTGGACAAGGTCCGGGCGATCCTCGCCGAGCGCTTGCAGGACCCGCCCGGCCTGGAGGAACTGGCCAGG
CGCCTGAACTGTTCGTCGCGCAGCCTGCGCCGGCACCTTCAGCAGCAGCGCACCAGCTATCAGCAATTGCTC
GACGAGTTGCGCTTCGCCCGCGCCAAGGAGTTGTTGCAGAGCGGCGACATGCCGATCTACCGGATCGCCGAG
GAACTCGGCTTCAGCGAGACCGCCAGCCTGCGCCATGCCTTCCAGCGCTGGAGCGGCCAGCCGCCGAGCCAT
TTCCGCGCCTGA
Translation:
MIDSTFSRATWLNSLHMSTLTLSLLEKEGFAREQLLEGSGITPADLLDLRRLISPWQEQQVFANACRLSDEP
ALGLRLGLRTRISAYGLLGYALLSAPTLGEALRIGLSYPVLLGTYFHLSLEVADGRAWLVATGYGEDEALRP
FNTELCLGSLKVTCADLLGQPLPLLEAAFDYAGDEAMVRAYAEGFACELHFERERSAIGFAAEWLERPLPLA
DPVTHREMLEQCRRQNIDLAARRAWLDKVRAILAERLQDPPGLEELARRLNCSSRSLRRHLQQQRTSYQQLL
DELRFARAKELLQSGDMPIYRIAEELGFSETASLRHAFQRWSGQPPSHFRA*
AnnotationID:2023GeneID:2014
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:42
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA2704
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70904.1|AE016734_8 (AE016794) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 356

 Score =  337 bits (864), Expect = 6e-92
 Identities = 181/329 (55%), Positives = 222/329 (67%), Gaps = 7/329 (2%)
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 49.3 bits (116), Expect = 6e-07
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Genomic Context:
Comment:
ReferenceID:4031
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21177
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36309
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2014_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2014

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3504 PA2704_tr translation of PA2704 339 99.70 99.70 0 1739.0
107462 gb|AAG06092.1|AE004698_8 (AE004698) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 339 99.70 99.70 0 1739.0
107463 gb|AAN70904.1|AE016734_8 (AE016794) transcriptional regulator, AraC family [Pseudomonas putida KT2440] 365 50.68 62.46 35 870.0
GC ORFID: 45016How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2704Glimmer Score:
Start: 2430878Stop: 2429859
Length: 1020
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2704 translation of PA2704Homolog Bit Score 674.0
Other Homologs: t_PA2704 (ORF: GLIMMER)
GC ORF Sequence
ATGATCGATTCGACCTTCTCCCGCGCCACCTGGCTCAACTCGCTGCACATGTCGACCCTCACTCTCTCGCTG
CTGGAGAAGGAAGGGTTCGCCCGCGAGCAACTGCTCGAAGGCAGTGGCATCACCCCCGCCGACCTGCTCGAC
CTGCGGCGCCTGATCAGCCCCTGGCAGGAGCAGCAGGTGTTCGCCAACGCCTGCCGGCTCAGCGACGAGCCG
GCCCTCGGCCTGCGCCTGGGGCTGCGCACGCGGATTTCCGCCTACGGCCTGCTCGGCTACGCGCTGCTCTCC
GCGCCGACCCTCGGCGAGGCGCTGCGCATCGGCCTCAGCTATCCGGTCTTGCTCGGCACCTACTTCCACCTG
TCGCTGGAAGTCGCCGACGGCCGCGCCTGGCTGGTGGCCACCGGCTACGGCGAGGACGAGGCGCTGCGGCCA
TTCAACACCGAGCTTTGCCTGGGCTCGCTGAAGGTCACCTGCGCCGACCTGCTCGGCCAGCCGCTGCCCTTG
CTGGAAGCGGCCTTCGACTATGCCGGCGACGAGGCGATGGTGCGGGCCTACGCCGAGGGTTTCGCCTGCGAG
TTGCACTTCGAACGCGAGCGCAGCGCCATCGGCTTCGCCGCCGAATGGCTGGAGCGCCCGTTGCCGCTGGCC
GACCCGGTGACCCACCGGGAGATGCTGGAACAGTGCCGGCGGCAGAACATCGACCTGGCCGCGCGTCGTGCC
TGGCTGGACAAGGTCCGGGCGATCCTCGCCGAGCGCTTGCAGGACCCGCCCGGCCTGGAGGAACTGGCCAGG
CGCCTGAACTGTTCGTCGCGCAGCCTGCGCCGGCACCTTCAGCAGCAGCGCACCAGCTATCAGCAATTGCTC
GACGAGTTGCGCTTCGCCCGCGCCAAGGAGTTGTTGCAGAGCGGCGACATGCCGATCTACCGGATCGCCGAG
GAACTCGGCTTCAGCGAGACCGCCAGCCTGCGCCATGCCTTCCAGCGCTGGAGCGGCCAGCCGCCGAGCCAT
TTCCGCGCCTGA