ViewGene
Locus Name:
GeneID:
Location:

GeneID:2012
TrivialName: PA14_52020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52020
PAO1 Ortholog Locus:PA0946
Sequence Length:1038
Protein Length:345
Start: 4617519
Stop: 4616482
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04335.1|AE004529_1 (AE004529) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 342/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGCGCATAGCCCGACTCTTCGTTCTCTGTTTTTCCCTGCTAGGCTTGCCCGTCTTCGCGGCAACGGTCCCC
AATCTCTACCAGGTCCACGAGCCGGTTTCGTCGCAGCAGCCCGGGGAGCGCGATGCCGGACTGGTGCGAGCC
CTGCAGACCCTGCTGGTGCGCCTGACCGGCAATCCGCAGGCGCCGCAGAACCCGGCATTGGCGGGGTACCTG
AAGGATCCGCAGCAACTGATCAGCCAGTACGCCTTCGAAAATGGTCCGCCGCTGGCGCTGGTGGTCGATTTC
GATCCAACCGCCACCGGTAATGCGCTGCGTGCCGCCGGCCTGCCGAGCTGGGGCGCCAACCGCCCGGCGGTG
CTGGCCTGGTGGCTGAACGAAAGCGCCGATGGCAGCACCCTGGTCGGTGACAACCAGGCCTCGGCCGAACCG
CTCAAGCGTGCGGCGCAGAACCGCGGCTTGCCGTTGCGCCTGCCTCTGGCGGATCTCGACGAACAGATCGTC
GGTACCCCGGAGAACCTCACCGCCGCCCAACCCGATGCCCTGCGCGCAGCCTCCGAGCGTTATGCCGCCGAT
GCCTTGCTGGCAGTGGACGCCAAGGAGGCGGACGGCAAATGGCAGGCGCAATGGCGGCTGTGGATGGGCGAT
TCGCGGGAGCAAGGCCAGGCTGAAGGCGCTACGCCCGACGCGTTGGCAGACAGCGTGATGCTGGCCGTCGGC
AACCGCCTGTCTACCCGTTTCGTTGCCACGCCGGGAGCGGCGACCGGCCTGACCCTCCAGGTCCAGGGCGCG
ACACTGGCACGCTATGCCGAGTTGCAACGCCTGCTCGATCCGTTCGGCGCGCGTCTGGTAGGCGTGCGGGGC
GATCGCCTCGACTATTCCGTGAAGGCCAGTCCCGAGCAATTACGTGCCCAGCTGGGCCTGGCGCAGTTGCAG
GAAATCCCGGCCGACAGCGTACCGCTGGATGCCTCCGGCCAGCCCGCAGCGCCCAGCGCGGCGGTGCCGTCG
TCGTCCCAACTGAATTTCCGCTGGCAGTGA
Translation:
MRIARLFVLCFSLLGLPVFAATVPNLYQVHEPVSSQQPGERDAGLVRALQTLLVRLTGNPQAPQNPALAGYL
KDPQQLISQYAFENGPPLALVVDFDPTATGNALRAAGLPSWGANRPAVLAWWLNESADGSTLVGDNQASAEP
LKRAAQNRGLPLRLPLADLDEQIVGTPENLTAAQPDALRAASERYAADALLAVDAKEADGKWQAQWRLWMGD
SREQGQAEGATPDALADSVMLAVGNRLSTRFVATPGAATGLTLQVQGATLARYAELQRLLDPFGARLVGVRG
DRLDYSVKASPEQLRAQLGLAQLQEIPADSVPLDASGQPAAPSAAVPSSSQLNFRWQ*
AnnotationID:2021GeneID:2012
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0946
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3249
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3249, Uncharacterized protein conserved in bacteria [Function unknown]
       CD-Length = 343 residues,  98.5% aligned
       Score =  354 bits (909), Expect = 1e-98






   
Genomic Context:






   
Comment:


















    ReferenceID:4027




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2012
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3502
                           PA0946_tr
                           translation of PA0946
                           345
                           99.13
                           99.71
                           0
                           1740.0
     

     
     
107447
                           gb|AAG04335.1|AE004529_1
                           (AE004529) hypothetical protein PA0946 [Pseudomonas aeruginosa PAO1]
                           345
                           99.13
                           99.71
                           0
                           1740.0
     

     
     
107448
                           gb|AAO55221.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           56.13
                           70.02
                           23
                           1025.0
     

     
     
107449
                           gb|AAN67287.1|AE016355_5
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           359
                           53.48
                           67.40
                           18
                           953.0
     

     






      

          
GC ORFID: 45014How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0946Glimmer Score: 

          
Start: 336388Stop: 337425

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0946 translation of PA0946Homolog Bit Score 674.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6461 (ORF: BLASTX 387.0), t_PA0946 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCATAGCCCGACTCTTCGTTCTCTGTTTTTCCCTGCTAGGCTTGCCCGTCTTCGCGGCAACGGTCCCC 
AATCTCTACCAGGTCCACGAGCCGGTTTCGTCGCAGCAGCCCGGGGAGCGCGATGCCGGACTGGTGCGAGCC 
CTGCAGACCCTGCTGGTGCGCCTGACCGGCAATCCGCAGGCGCCGCAGAACCCGGCATTGGCGGGGTACCTG 
AAGGATCCGCAGCAACTGATCAGCCAGTACGCCTTCGAAAATGGTCCGCCGCTGGCGCTGGTGGTCGATTTC 
GATCCAACCGCCACCGGTAATGCGCTGCGTGCCGCCGGCCTGCCGAGCTGGGGCGCCAACCGCCCGGCGGTG 
CTGGCCTGGTGGCTGAACGAAAGCGCCGATGGCAGCACCCTGGTCGGTGACAACCAGGCCTCGGCCGAACCG 
CTCAAGCGTGCGGCGCAGAACCGCGGCTTGCCGTTGCGCCTGCCTCTGGCGGATCTCGACGAACAGATCGTC 
GGTACCCCGGAGAACCTCACCGCCGCCCAACCCGATGCCCTGCGCGCAGCCTCCGAGCGTTATGCCGCCGAT 
GCCTTGCTGGCAGTGGACGCCAAGGAGGCGGACGGCAAATGGCAGGCGCAATGGCGGCTGTGGATGGGCGAT 
TCGCGGGAGCAAGGCCAGGCTGAAGGCGCTACGCCCGACGCGTTGGCAGACAGCGTGATGCTGGCCGTCGGC 
AACCGCCTGTCTACCCGTTTCGTTGCCACGCCGGGAGCGGCGACCGGCCTGACCCTCCAGGTCCAGGGCGCG 
ACACTGGCACGCTATGCCGAGTTGCAACGCCTGCTCGATCCGTTCGGCGCGCGTCTGGTAGGCGTGCGGGGC 
GATCGCCTCGACTATTCCGTGAAGGCCAGTCCCGAGCAATTACGTGCCCAGCTGGGCCTGGCGCAGTTGCAG 
GAAATCCCGGCCGACAGCGTACCGCTGGATGCCTCCGGCCAGCCCGCAGCGCCCAGCGCGGCGGTGCCGTCG 
TCGTCCCAACTGAATTTCCGCTGGCAGTGA