ViewGene
Locus Name:
GeneID:
Location:

GeneID:2011
TrivialName: PA14_59050
AnnotatorUID: danlee
Modification Date/Time:2006-04-14 10:10:00
LocusName:PA14_59050
PAO1 Ortholog Locus:
Sequence Length:1017
Protein Length:338
Start: 5259130
Stop: 5260146
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84229.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGCCTATCAAACACGCCATCGTCCACCTGATCGAGAAGAAGCCCGACGGCACCCCGGCCGTGCTCCACGCG
CGCGACGCCGAGCTGGGCGACTCCCAGGCCATCGAGAACCTGCTGGCCGACCTCAACGAAAGCTACAACGCC
AAGAACAAGGCCTGGGGCTTCTTCCAGGGCGAGTCCGGGGCCTACCCGTTCAGCGGCTGGCTCGGCGAGTAC
CTGGAGGGCGACCGCGACTTCGTCGGCTTCAGCCGCGAAGCGGTCGAGCACCTGCAAAAGCTGATGGAGGAG
TCCAATCTCTCCACCGGCGGCCACGTCCTGTTCGCCCACTACCAGCAAGGCATGACCGACTACCTGGCGATC
GCCCTGCTGCACCACAGCGAAGGCGTGGCGGTGAACGAGTCGCTGGAGGTCACCCCGTCGCGCCACCTGGAC
CTCGGCCAGTTGCACCTGGCCGCGCGGATCAACATTTCCGAATGGCGCAACAACAAGCAGTCGAAGCAGTAC
ATCTCGTTCATCAAGGGCAAGGGCGGGAGGAAGGTCTCCGACTATTTCCGCGACTTCATCGGCTGCCAGGAA
GGGGTGGATTCGCCGAGCGAGACGCGCACCCTGCTGAAAGCCTTCAGCGATTTCGTGGAAAGCGAGGACATG
GCCGAGGAACAGGCCCGCGAGAAGACCGAGACGCTGGTCGACTACGCCACCTCGCAGGCGCGCATCGGCGAG
CCGATGACCCTCGACGCGCTTTCGGAACTGATGGACGACCAGCAACCGCGGGCGTTCTACGACTACATCCGT
AACAAGGACTACGGCCTGTCGCCGGAAATCCCGGCGGACAAGCGCACCCTCAACCAGTTCCGCCGCTTCACC
GGCCGCGCCGAAGGCCTGTCGATCAGCTTCGAGGCGCACCTGCTGGGCTCCAGGATCGAGTACGACGAGGAG
CGCGACACGCTGCAGATCAGCAGCCTCCCCACTCAACTCCGCGACCAGCTCAAGCGGCGCAAGGCCCAAATT
GGAGAATGA
Translation:
MPIKHAIVHLIEKKPDGTPAVLHARDAELGDSQAIENLLADLNESYNAKNKAWGFFQGESGAYPFSGWLGEY
LEGDRDFVGFSREAVEHLQKLMEESNLSTGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNESLEVTPSRHLD
LGQLHLAARINISEWRNNKQSKQYISFIKGKGGRKVSDYFRDFIGCQEGVDSPSETRTLLKAFSDFVESEDM
AEEQAREKTETLVDYATSQARIGEPMTLDALSELMDDQQPRAFYDYIRNKDYGLSPEIPADKRTLNQFRRFT
GRAEGLSISFEAHLLGSRIEYDEERDTLQISSLPTQLRDQLKRRKAQIGE*
AnnotationID:2020GeneID:2011
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 14:02:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:putative nucleoid-associated family protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54790.1| (AE016860) nucleoid-associated family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 333

 Score =  566 bits (1460), Expect = e-161
 Identities = 278/333 (83%), Positives = 303/333 (90%), Gaps = 1/333 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Similar to GID2022, PA14_14220 (PAO1 PA3849).


















    ReferenceID:4025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17047




  
Author/Investigator(s):
        Murphy LD, Rosner JL, Zimmerman SB, Esposito D.





  
Title:
        Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli




  
PubMed:
        


MedLine:
        




    
Source:
J Bacteriol. 1999 Jun;181(12):3842-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:21171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38239




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2011_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2011
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
107440
                           gb|AAP84229.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           338
                           99.99
                           99.99
                           0
                           1748.0
     

     
     
3501
                           PA3849_tr
                           translation of PA3849
                           338
                           95.56
                           97.04
                           4
                           1682.0
     

     
     
107441
                           gb|AAG07236.1|AE004802_5
                           (AE004802) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           338
                           95.56
                           97.04
                           4
                           1682.0
     

     
     
107442
                           gb|AAO54790.1|
                           (AE016860) nucleoid-associated family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           339
                           82.00
                           89.38
                           7
                           1462.0
     

     
     
107443
                           dbj|BAC41613.1|
                           (AB088420) hypothetical protein [Pseudomonas resinovorans]
                           339
                           81.41
                           89.67
                           7
                           1456.0
     

     






      

          
GC ORFID: 45013How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL104Glimmer Score: 

          
Start: 4522809Stop: 4523825

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL104 338 Homolog: PA3849 / Hypothetical protein / P.aeruginosa / PA01 (AAG07236) translation of RL104Homolog Bit Score 675.0

          
Other Homologs:  t_PA3849 (ORF: BLASTX 653.0), psyr_15may02_Scaffold3_revised_gene4978 (ORF: BLASTX 565.0), t_RL104 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTATCAAACACGCCATCGTCCACCTGATCGAGAAGAAGCCCGACGGCACCCCGGCCGTGCTCCACGCG 
CGCGACGCCGAGCTGGGCGACTCCCAGGCCATCGAGAACCTGCTGGCCGACCTCAACGAAAGCTACAACGCC 
AAGAACAAGGCCTGGGGCTTCTTCCAGGGCGAGTCCGGGGCCTACCCGTTCAGCGGCTGGCTCGGCGAGTAC 
CTGGAGGGCGACCGCGACTTCGTCGGCTTCAGCCGCGAAGCGGTCGAGCACCTGCAAAAGCTGATGGAGGAG 
TCCAATCTCTCCACCGGCGGCCACGTCCTGTTCGCCCACTACCAGCAAGGCATGACCGACTACCTGGCGATC 
GCCCTGCTGCACCACAGCGAAGGCGTGGCGGTGAACGAGTCGCTGGAGGTCACCCCGTCGCGCCACCTGGAC 
CTCGGCCAGTTGCACCTGGCCGCGCGGATCAACATTTCCGAATGGCGCAACAACAAGCAGTCGAAGCAGTAC 
ATCTCGTTCATCAAGGGCAAGGGCGGGAGGAAGGTCTCCGACTATTTCCGCGACTTCATCGGCTGCCAGGAA 
GGGGTGGATTCGCCGAGCGAGACGCGCACCCTGCTGAAAGCCTTCAGCGATTTCGTGGAAAGCGAGGACATG 
GCCGAGGAACAGGCCCGCGAGAAGACCGAGACGCTGGTCGACTACGCCACCTCGCAGGCGCGCATCGGCGAG 
CCGATGACCCTCGACGCGCTTTCGGAACTGATGGACGACCAGCAACCGCGGGCGTTCTACGACTACATCCGT 
AACAAGGACTACGGCCTGTCGCCGGAAATCCCGGCGGACAAGCGCACCCTCAACCAGTTCCGCCGCTTCACC 
GGCCGCGCCGAAGGCCTGTCGATCAGCTTCGAGGCGCACCTGCTGGGCTCCAGGATCGAGTACGACGAGGAG 
CGCGACACGCTGCAGATCAGCAGCCTCCCCACTCAACTCCGCGACCAGCTCAAGCGGCGCAAGGCCCAAATT 
GGAGAATGA