ViewGene
Locus Name:
GeneID:
Location:

GeneID:2010
TrivialName: PA14_08350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08350
PAO1 Ortholog Locus:PA0650
Sequence Length:1050
Protein Length:349
Start: 715068
Stop: 716117
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04039.1|AE004500_5 (AE004500) anthranilate phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 349/349 (100%), Positives = 349/349 (100%)
Sequence:
ATGGATATCAAGGGAGCCCTCAATCGCATCGTCAACCAGCTCGACCTGACCACCGAGGAAATGCAGGCGGTC
ATGCGCCAGATCATGACCGGGCAGTGCACCGACGCGCAGATCGGCGCCTTCCTGATGGGCATGCGGATGAAG
AGCGAAACCATCGACGAGATCGTCGGCGCGGTGGCGGTGATGCGCGAACTGGCCGACGGTGTGCAGTTGCCT
ACGCTGAAGCATGTGGTCGACGTGGTCGGCACCGGCGGCGATGGCGCGAACATCTTCAACGTATCCTCGGCG
GCGTCCTTCGTGGTCGCCGCCGCTGGCGGCAAGGTCGCCAAACACGGTAACCGCGCGGTCTCCGGCAAGAGC
GGCAGCGCCGACTTGCTGGAAGCCGCCGGCATCTACCTGGAACTGACCTCCGAACAGGTGGCGCGTTGCATC
GACACCGTCGGCGTCGGGTTCATGTTCGCCCAGGTCCACCACAAGGCGATGAAGTACGCCGCCGGTCCGCGC
CGCGAGCTGGGCTTGCGGACTCTGTTCAACATGCTTGGCCCACTGACCAACCCGGCGGGAGTCAGGCACCAG
GTGGTCGGGGTGTTCACCCAGGAACTGTGCAAGCCGCTGGCTGAAGTGCTCAAGCGTCTCGGCAGCGAGCAT
GTGCTGGTGGTGCATTCGCGCGACGGGCTGGACGAGTTCAGTCTGGCCGCGGCGACCCACATTGCCGAGTTG
AAGGACGGCGAGGTACGCGAGTACGAAGTGCGTCCCGAGGACTTCGGGATCAAGAGCCAGACCCTGATGGGG
CTGGAGGTCGACAGTCCGCAGGCCTCGCTGGAACTGATCCGCGACGCTTTGGGGCGGCGCAAGACCGAGGCT
GGGCAGAAGGCCGCCGAGCTGATCGTGATGAATGCCGGCCCGGCACTGTACGCTGCCGATCTGGCGACCAGC
CTGCACGAGGGCATTCAACTGGCCCACGATGCCCTGCACACCGGGCTGGCACGGGAGAAGATGGACGAACTG
GTGGCCTTCACCGCCGTTTACAGAGAGGAGAACGCACAGTGA
Translation:
MDIKGALNRIVNQLDLTTEEMQAVMRQIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAVAVMRELADGVQLP
TLKHVVDVVGTGGDGANIFNVSSAASFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGIYLELTSEQVARCI
DTVGVGFMFAQVHHKAMKYAAGPRRELGLRTLFNMLGPLTNPAGVRHQVVGVFTQELCKPLAEVLKRLGSEH
VLVVHSRDGLDEFSLAAATHIAELKDGEVREYEVRPEDFGIKSQTLMGLEVDSPQASLELIRDALGRRKTEA
GQKAAELIVMNAGPALYAADLATSLHEGIQLAHDALHTGLAREKMDELVAFTAVYREENAQ*
AnnotationID:2019GeneID:2010
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:22
Gene Name:trpD
Confidence Code:1
GeneProduct:anthranilate phosphoribosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0547,pfam00591
Secondary Functional Category(ies):
EC Number:2.4.2.18
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54135.1| (AE016858) anthranilate phosphoribosyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 349

 Score =  552 bits (1422), Expect = e-156
 Identities = 281/347 (80%), Positives = 315/347 (90%)

>gb|AAN66051.1|AE016234_4 (AE016775) anthranilate phosphoribosyltransferase [Pseudomonas
           putida KT2440]
          Length = 349

 Score =  538 bits (1386), Expect = e-152
 Identities = 276/347 (79%), Positives = 311/347 (89%)

>gb|AAA21904.1| (M36636) anthranilate phosphoribosyltransferase (EC 2.4.2.18)
           [Acinetobacter calcoaceticus]
          Length = 349

 Score =  421 bits (1081), Expect = e-117
 Identities = 207/345 (60%), Positives = 269/345 (77%)








 
Structural Features:
COG0547, TrpD, Anthranilate phosphoribosyltransferase 
[Amino acid transport and metabolism]
CD-Length = 338 residues,  99.1% aligned
Score =  393 bits (1012), Expect = 1e-110
Identities = 167/340 (49%), Positives = 228/340 (67%), Gaps = 5/340 (1%)

pfam00591, Glycosyl transferase family, a/b domain.
CD-Length = 254 residues, 100.0% aligned
Score =  300 bits (770), Expect = 2e-82
Identities = 131/257 (50%), Positives = 164/257 (63%), Gaps = 3/257 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34606




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2010_cdd.html


    		




 
URL:

















    ReferenceID:35252




  
Author/Investigator(s):
        Essar DW, Eberly L, Han CY, Crawford IP.





  
Title:
        DNA sequences and characterization of four early genes of the tryptophan pathway in Pseudomonas aeruginosa.




  
PubMed:
        2105306


MedLine:
        




    
Source:
J Bacteriol. 1990 Feb;172(2):853-66.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2105306









           
Homologs By Global Alignment 

           

       



     
Gene ID:2010
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3500
                           PA0650_tr
                           translation of PA0650
                           349
                           99.99
                           99.99
                           0
                           1742.0
     

     
     
107384
                           gb|AAG04039.1|AE004500_5
                           (AE004500) anthranilate phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
                           349
                           99.99
                           99.99
                           0
                           1742.0
     

     
     
107385
                           gb|AAA25824.1|
                           (M33814) trpD protein [Pseudomonas aeruginosa]
                           349
                           99.99
                           99.99
                           0
                           1742.0
     

     
     
107386
                           gb|AAO54135.1|
                           (AE016858) anthranilate phosphoribosyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           80.51
                           90.25
                           0
                           1420.0
     

     
     
107387
                           gb|AAA80554.1|
                           (M33799) phosphoribosyl transferase [Pseudomonas putida]
                           349
                           79.08
                           89.68
                           0
                           1391.0
     

     






      

          
GC ORFID: 45012How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0650Glimmer Score: 

          
Start: 6516411Stop: 6517460

          
Length: 1050


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0650 translation of PA0650Homolog Bit Score 675.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2358 (ORF: BLASTX 556.0), t_PA0650 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATATCAAGGGAGCCCTCAATCGCATCGTCAACCAGCTCGACCTGACCACCGAGGAAATGCAGGCGGTC 
ATGCGCCAGATCATGACCGGGCAGTGCACCGACGCGCAGATCGGCGCCTTCCTGATGGGCATGCGGATGAAG 
AGCGAAACCATCGACGAGATCGTCGGCGCGGTGGCGGTGATGCGCGAACTGGCCGACGGTGTGCAGTTGCCT 
ACGCTGAAGCATGTGGTCGACGTGGTCGGCACCGGCGGCGATGGCGCGAACATCTTCAACGTATCCTCGGCG 
GCGTCCTTCGTGGTCGCCGCCGCTGGCGGCAAGGTCGCCAAACACGGTAACCGCGCGGTCTCCGGCAAGAGC 
GGCAGCGCCGACTTGCTGGAAGCCGCCGGCATCTACCTGGAACTGACCTCCGAACAGGTGGCGCGTTGCATC 
GACACCGTCGGCGTCGGGTTCATGTTCGCCCAGGTCCACCACAAGGCGATGAAGTACGCCGCCGGTCCGCGC 
CGCGAGCTGGGCTTGCGGACTCTGTTCAACATGCTTGGCCCACTGACCAACCCGGCGGGAGTCAGGCACCAG 
GTGGTCGGGGTGTTCACCCAGGAACTGTGCAAGCCGCTGGCTGAAGTGCTCAAGCGTCTCGGCAGCGAGCAT 
GTGCTGGTGGTGCATTCGCGCGACGGGCTGGACGAGTTCAGTCTGGCCGCGGCGACCCACATTGCCGAGTTG 
AAGGACGGCGAGGTACGCGAGTACGAAGTGCGTCCCGAGGACTTCGGGATCAAGAGCCAGACCCTGATGGGG 
CTGGAGGTCGACAGTCCGCAGGCCTCGCTGGAACTGATCCGCGACGCTTTGGGGCGGCGCAAGACCGAGGCT 
GGGCAGAAGGCCGCCGAGCTGATCGTGATGAATGCCGGCCCGGCACTGTACGCTGCCGATCTGGCGACCAGC 
CTGCACGAGGGCATTCAACTGGCCCACGATGCCCTGCACACCGGGCTGGCACGGGAGAAGATGGACGAACTG 
GTGGCCTTCACCGCCGTTTACAGAGAGGAGAACGCACAGTGA