ViewGene
Locus Name:
GeneID:
Location:

GeneID:2009
TrivialName: PA14_04250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04250
PAO1 Ortholog Locus:PA0326
Sequence Length:1050
Protein Length:349
Start: 381299
Stop: 380250
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03715.1|AE004470_9 (AE004470) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 344/349 (98%), Positives = 348/349 (99%)
Sequence:
ATGACCAGCGCGATAGCCATCGAGCGGATCTGCATGGAATTCGGTACCCCCGGCCAAGGCCTGAAGGCCCTT
GACGATGTGTCCCTGGATATCCACGCCAACGAATTCTTCACCCTCCTCGGCCCTTCCGGCTGCGGCAAGACC
ACCCTCCTCCGCCTCATCGCCGGTTTCGAACAACCCAGCTCCGGCAGCATCCGCCTCTATGGCGAACGCATG
GAAGGCCTGCCGCCGTTCCGCCGCCCGGTCAACACGGTGTTCCAGAGTTATGCGCTGTTCCCGCACATGAGC
GTCGCCGAGAACATCGGCTTCGGCCTGGAGATGCAGGGCCGCCCGCGCAGCGAGATCGACGCCACCGTGAGC
CGCATGCTCGAGCTGGTGAAGCTGCCGGAGGTCGGCAAGCGCCGCGCCGACCAGTTGTCCGGTGGCCAGCAG
CAACGCATCGCCCTGGCCCGCGCGCTGGCCAGCCGGCCCAAGGTGCTGCTGCTCGACGAGTCGCTGTCGGCG
CTGGACCTGAAGCTGCGCAAGGAAATGCAGATCGAGCTGAAGCGCCTGCAGCACGAGACCGGGATCACCTTC
ATCTTCGTCACCCATGACCAGGAGGAAGCGCTGACCATGTCCGACCGCATCGCGGTGATGAGCAAGGGCAAG
GTGCTGCAGGTCGGCACACCCAGCGACATCTACGAGGCGCCGCTGAACCGGGCGGTCGCCGACTTCATCGGC
GAAACCAACTTCCTCGAGGGCCAGGCCGACGCCGACGGCGTGCGCCTGGCGGACGGCCAGCGGCTGGCCGCG
ACGACCCCGGGCAGCGGCGCGGTGACCCTGGCGATCCGCCCGGAGCGCACCGAACTGGCCGCCGACGGCCAG
TTGGAAGGCGTGCTGGAAAACGTCGTCTATGTCGGCACCGATACCGTCTACCACCTGAACGTGGCCGGCCAG
CCGGGCTTCCGCGTGCGCCAGCAGAACCGCGACGGCGCACGCTGCCCGCACAGTCCGGGGGCGAAGGTGCGG
GTGCGGGTTCCCGCCGCCGCCATCCGGGTGCTCGCCGAATGA
Translation:
MTSAIAIERICMEFGTPGQGLKALDDVSLDIHANEFFTLLGPSGCGKTTLLRLIAGFEQPSSGSIRLYGERM
EGLPPFRRPVNTVFQSYALFPHMSVAENIGFGLEMQGRPRSEIDATVSRMLELVKLPEVGKRRADQLSGGQQ
QRIALARALASRPKVLLLDESLSALDLKLRKEMQIELKRLQHETGITFIFVTHDQEEALTMSDRIAVMSKGK
VLQVGTPSDIYEAPLNRAVADFIGETNFLEGQADADGVRLADGQRLAATTPGSGAVTLAIRPERTELAADGQ
LEGVLENVVYVGTDTVYHLNVAGQPGFRVRQQNRDGARCPHSPGAKVRVRVPAAAIRVLAE*
AnnotationID:2018GeneID:2009
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:09
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA0326
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC-type spermidine/putrescine transport systems, ATPase component
Functional Category Confidence Code:5
COGs:COG3842,COG3839,COG1118
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB49909.1| (AP003000) ABC transporter, ATP-binding component [Mesorhizobium
           loti]
          Length = 364

 Score =  393 bits (1010), Expect = e-109
 Identities = 215/358 (60%), Positives = 254/358 (70%), Gaps = 12/358 (3%)

>emb|CAC45287.1| (AL591784) PROBABLE PUTRESCINE TRANSPORT ATP-BINDING PROTEIN
           [Sinorhizobium meliloti]
          Length = 381

 Score =  316 bits (810), Expect = 1e-85
 Identities = 174/348 (50%), Positives = 237/348 (68%), Gaps = 32/348 (9%)








 
Structural Features:
COG3842, PotA, ABC-type spermidine/putrescine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  99.7% aligned
Score =  380 bits (978), Expect = 1e-106
Identities = 186/358 (51%), Positives = 228/358 (63%), Gaps = 16/358 (4%)

COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues,  99.4% aligned
Score =  324 bits (831), Expect = 1e-89
Identities = 153/349 (43%), Positives = 214/349 (61%), Gaps = 15/349 (4%)

COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 345 residues,  96.8% aligned
Score =  274 bits (701), Expect = 1e-74
Identities = 146/338 (43%), Positives = 194/338 (57%), Gaps = 15/338 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33672




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2009_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2009
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3483
                           PA0326_tr
                           translation of PA0326
                           349
                           98.56
                           99.71
                           0
                           1742.0
     

     
     
106683
                           gb|AAG03715.1|AE004470_9
                           (AE004470) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           349
                           98.56
                           99.71
                           0
                           1742.0
     

     
     
106684
                           dbj|BAB49909.1|
                           (AP003000) ABC transporter, ATP-binding component [Mesorhizobium loti]
                           366
                           59.28
                           70.21
                           19
                           1020.0
     

     
     
3484
                           PA0206_tr
                           translation of PA0206
                           372
                           54.03
                           64.51
                           25
                           868.0
     

     
     
106686
                           gb|AAG03595.1|AE004458_10
                           (AE004458) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           372
                           54.03
                           64.51
                           25
                           868.0
     

     






      

          
GC ORFID: 45011How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0326Glimmer Score: 

          
Start: 6182641Stop: 6181592

          
Length: 1050


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0326 translation of PA0326Homolog Bit Score 675.0

          
Other Homologs:  t_PA0206 (ORF: BLASTX 334.0), t_PA3607 (ORF: BLASTX 293.0), t_PA0603 (ORF: BLASTX 260.0), psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 259.0), psyr_15may02_Scaffold7_revised_gene6993 (ORF: BLASTX 257.0), psyr_15may02_Scaffold7_revised_gene6963 (ORF: BLASTX 248.0), t_PA3254 (ORF: BLASTX 233.0), psyr_15may02_Scaffold16_revised_gene2680 (ORF: BLASTX 233.0), t_PA0280 (ORF: BLASTX 225.0), psyr_15may02_Scaffold2_revised_gene3068 (ORF: BLASTX 224.0), t_PA2341 (ORF: BLASTX 221.0), t_PA3538 (ORF: BLASTX 219.0), psyr_15may02_Scaffold5_revised_gene6124 (ORF: BLASTX 212.0), psyr_15may02_Scaffold4_revised_gene5887 (ORF: BLASTX 212.0), t_PA0326 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCGCGATAGCCATCGAGCGGATCTGCATGGAATTCGGTACCCCCGGCCAAGGCCTGAAGGCCCTT 
GACGATGTGTCCCTGGATATCCACGCCAACGAATTCTTCACCCTCCTCGGCCCTTCCGGCTGCGGCAAGACC 
ACCCTCCTCCGCCTCATCGCCGGTTTCGAACAACCCAGCTCCGGCAGCATCCGCCTCTATGGCGAACGCATG 
GAAGGCCTGCCGCCGTTCCGCCGCCCGGTCAACACGGTGTTCCAGAGTTATGCGCTGTTCCCGCACATGAGC 
GTCGCCGAGAACATCGGCTTCGGCCTGGAGATGCAGGGCCGCCCGCGCAGCGAGATCGACGCCACCGTGAGC 
CGCATGCTCGAGCTGGTGAAGCTGCCGGAGGTCGGCAAGCGCCGCGCCGACCAGTTGTCCGGTGGCCAGCAG 
CAACGCATCGCCCTGGCCCGCGCGCTGGCCAGCCGGCCCAAGGTGCTGCTGCTCGACGAGTCGCTGTCGGCG 
CTGGACCTGAAGCTGCGCAAGGAAATGCAGATCGAGCTGAAGCGCCTGCAGCACGAGACCGGGATCACCTTC 
ATCTTCGTCACCCATGACCAGGAGGAAGCGCTGACCATGTCCGACCGCATCGCGGTGATGAGCAAGGGCAAG 
GTGCTGCAGGTCGGCACACCCAGCGACATCTACGAGGCGCCGCTGAACCGGGCGGTCGCCGACTTCATCGGC 
GAAACCAACTTCCTCGAGGGCCAGGCCGACGCCGACGGCGTGCGCCTGGCGGACGGCCAGCGGCTGGCCGCG 
ACGACCCCGGGCAGCGGCGCGGTGACCCTGGCGATCCGCCCGGAGCGCACCGAACTGGCCGCCGACGGCCAG 
TTGGAAGGCGTGCTGGAAAACGTCGTCTATGTCGGCACCGATACCGTCTACCACCTGAACGTGGCCGGCCAG 
CCGGGCTTCCGCGTGCGCCAGCAGAACCGCGACGGCGCACGCTGCCCGCACAGTCCGGGGGCGAAGGTGCGG 
GTGCGGGTTCCCGCCGCCGCCATCCGGGTGCTCGCCGAATGA