ViewGene
Locus Name:
GeneID:
Location:

GeneID:2008
TrivialName: PA14_65420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65420
PAO1 Ortholog Locus:PA4952
Sequence Length:1020
Protein Length:339
Start: 5828325
Stop: 5829344
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08337.1|AE004908_3 (AE004908) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 337/339 (99%), Positives = 338/339 (99%)
Sequence:
ATGGCCAAACGCCACTTGACCCGCCGGCAGAGCTGGCGCATCGAAAAGATCCAGGAAGAACGCGCGGCCCGG
GCGGCCCGTCGCGAGTTGCGTGCCGTGGACGAGCTGGAAGGCGGCGACCTGGGACCGGAGCAGACCGGCCAG
GTGATCGCTCATTTCGGGGTTCAGGTAGAGGTCGAGTCCGCCGACGGCCAGGTTTCCCGCTGTCACCTGCGC
GCCAACCTGCCGGCACTGGTGACCGGCGACCAGGTGGTCTGGCGTGCCGGCAACCAGGGCATCGGCGTGATC
GTCGCGCAATTGCCGCGCCGCTCCGAGCTGTGCCGCCCGGACATGCGCGGGCTGCTCAAGCCGGTGGCGGCC
AACGTCGACCGCATCGTCATCGTCTTCGCCCCGCGTCCCGAACCGCACGCCAACCTGATCGACCGCTACCTG
ATCGCCGCCGAACATGCCGGCATCCAGCCGTTGCTGCTGCTGAACAAGGCCGACCTGGTCGACGAGAGCAAT
GCCGAAGGCATCGATGCGCTGCTGAATGTCTACCGCACCCTGGGTTATCCGCTGATCGAGGTGTCGGCCTTC
AATGGCCTGGCGATGGACGAACTGCGCGGCGCGCTGGACGGTCATGTGAGCGTCTTCGTCGGGCAGTCCGGG
GTGGGCAAGTCGTCGCTGGTGAATGCCTTGTTGCCGGGTGTCGACACCCGTGTCGGCGACCTCTCCACGGTG
ACCGGCAAGGGCACCCATACCACCACCACCGCGCGACTGTTCCATTTTCCCGGCGGCGGCGACCTGATCGAC
TCGCCCGGCATCCGTGAGTTCGGCCTGGGGCACGTGTCGCGAGACGACGTCGAGGCCGGTTTCATCGAGTTC
CGCGACCTGCTCGGGCATTGCCGCTTCCGCGACTGCAAGCACGACCGCGAACCAGGTTGCGCCCTGCTCCAG
GCCCTGGAGGACGGGCGCATCATGCCGCAACGCATGGCCAGCTACCGGCACATTCTGGCAAGCATGCCGGAA
ACGGACTACTGA
Translation:
MAKRHLTRRQSWRIEKIQEERAARAARRELRAVDELEGGDLGPEQTGQVIAHFGVQVEVESADGQVSRCHLR
ANLPALVTGDQVVWRAGNQGIGVIVAQLPRRSELCRPDMRGLLKPVAANVDRIVIVFAPRPEPHANLIDRYL
IAAEHAGIQPLLLLNKADLVDESNAEGIDALLNVYRTLGYPLIEVSAFNGLAMDELRGALDGHVSVFVGQSG
VGKSSLVNALLPGVDTRVGDLSTVTGKGTHTTTTARLFHFPGGGDLIDSPGIREFGLGHVSRDDVEAGFIEF
RDLLGHCRFRDCKHDREPGCALLQALEDGRIMPQRMASYRHILASMPETDY*
AnnotationID:2017GeneID:2008
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 15:03:11
Gene Name:
Confidence Code:3
GeneProduct:putative GTPase
Cell Localization:()
Synonyms:PA4952
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1162
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO71852.1| (AE016849) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 358

 Score =  302 bits (774), Expect = 2e-81
 Identities = 155/344 (45%), Positives = 223/344 (64%), Gaps = 14/344 (4%)






 
Structural Features:
COG1162, COG1162, Predicted GTPases
CD-Length = 301 residues,  97.7% aligned
Score =  339 bits (870), Expect = 4e-94
Identities = 124/304 (40%), Positives = 177/304 (58%), Gaps = 10/304 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4019




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35069




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2008_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2008
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3482
                           PA4952_tr
                           translation of PA4952
                           339
                           99.41
                           99.70
                           0
                           1741.0
     

     
     
106646
                           gb|AAG08337.1|AE004908_3
                           (AE004908) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           339
                           99.41
                           99.70
                           0
                           1741.0
     

     
     
106647
                           gb|AAO58379.1|
                           (AE016873) conserved hypothetical protein TIGR00157 [Pseudomonas syringae pv. tomato str. DC3000]
                           343
                           78.42
                           86.00
                           4
                           1383.0
     

     
     
106648
                           gb|AAN70470.1|AE016688_9
                           (AE016792) conserved hypothetical protein TIGR00157 [Pseudomonas putida KT2440]
                           343
                           77.84
                           85.71
                           4
                           1379.0
     

     
     
106649
                           gb|AAC23359.1|
                           (U32844) conserved hypothetical protein [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20]
                           350
                           46.00
                           65.42
                           15
                           814.0
     

     






      

          
GC ORFID: 45010How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4952Glimmer Score: 

          
Start: 5092006Stop: 5093025

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4952 translation of PA4952Homolog Bit Score 675.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3665 (ORF: BLASTX 538.0), t_PA4952 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAACGCCACTTGACCCGCCGGCAGAGCTGGCGCATCGAAAAGATCCAGGAAGAACGCGCGGCCCGG 
GCGGCCCGTCGCGAGTTGCGTGCCGTGGACGAGCTGGAAGGCGGCGACCTGGGACCGGAGCAGACCGGCCAG 
GTGATCGCTCATTTCGGGGTTCAGGTAGAGGTCGAGTCCGCCGACGGCCAGGTTTCCCGCTGTCACCTGCGC 
GCCAACCTGCCGGCACTGGTGACCGGCGACCAGGTGGTCTGGCGTGCCGGCAACCAGGGCATCGGCGTGATC 
GTCGCGCAATTGCCGCGCCGCTCCGAGCTGTGCCGCCCGGACATGCGCGGGCTGCTCAAGCCGGTGGCGGCC 
AACGTCGACCGCATCGTCATCGTCTTCGCCCCGCGTCCCGAACCGCACGCCAACCTGATCGACCGCTACCTG 
ATCGCCGCCGAACATGCCGGCATCCAGCCGTTGCTGCTGCTGAACAAGGCCGACCTGGTCGACGAGAGCAAT 
GCCGAAGGCATCGATGCGCTGCTGAATGTCTACCGCACCCTGGGTTATCCGCTGATCGAGGTGTCGGCCTTC 
AATGGCCTGGCGATGGACGAACTGCGCGGCGCGCTGGACGGTCATGTGAGCGTCTTCGTCGGGCAGTCCGGG 
GTGGGCAAGTCGTCGCTGGTGAATGCCTTGTTGCCGGGTGTCGACACCCGTGTCGGCGACCTCTCCACGGTG 
ACCGGCAAGGGCACCCATACCACCACCACCGCGCGACTGTTCCATTTTCCCGGCGGCGGCGACCTGATCGAC 
TCGCCCGGCATCCGTGAGTTCGGCCTGGGGCACGTGTCGCGAGACGACGTCGAGGCCGGTTTCATCGAGTTC 
CGCGACCTGCTCGGGCATTGCCGCTTCCGCGACTGCAAGCACGACCGCGAACCAGGTTGCGCCCTGCTCCAG 
GCCCTGGAGGACGGGCGCATCATGCCGCAACGCATGGCCAGCTACCGGCACATTCTGGCAAGCATGCCGGAA 
ACGGACTACTGA