ViewGene
Locus Name:
GeneID:
Location:

GeneID:2007
TrivialName: PA14_09580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09580
PAO1 Ortholog Locus:PA4202
Sequence Length:1056
Protein Length:351
Start: 823833
Stop: 824888
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07589.1|AE004836_8 (AE004836) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 346/351 (98%), Positives = 346/351 (98%)
Sequence:
ATGACTGACCGCTTCACGCGCCTGCTCGGCATCCAGCAGCCGATCATCCAGGCACCCATGCTCGGCGTCTCC
ACGCCGGCGCTGGCCGCCGCCGTATCGAACGCCGGCGGGCTCGGTTCGATCGCCATCACCGGTAGCGCCGCC
GAGAAAGGCCGGGCGCTGATCCGCGAGGTGCGCGGGCTGACCGACAAGCCATTCAACGTCAACCTGTTCTGC
CACCGCCCGGGGCAGGCCGACCCGGCCCGCGAGCGCGCCTGGCTGGACTACCTGAAGCCGCTGTTCGCCGAG
TTCGGCGCCGAGCCGCCGGCGCGCCTGAACAACATCTACCTGAGCTTCCTCGAAGACCCGACCCTGCTGCCG
ATGCTGCTGGAAGAGCGGCCGGCGGCGGTCAGCTTCCATTTCGGCGCGCCGCCCCGCGACCAGGTTCGCGCG
TTGCAGGCGGCGGGCATCCGCGTACTGGTCAGTGCCACCACGCCGGAGGAAGCGGCTCTGGTGGAGGCCGCC
GGCGCCGATGCGGTGGTCgccCAGGGCATCGAGGCCGGTGGCCATCGCgggGTGTTCGAGCCGGAGCGCGGC
GACGCCGCCATCGGCACCCTGGCGCTGGTCCGCCTGCTGGCGGCGCGCGGTTCGCTACCGGTGGTCGCTGCC
GGCGGGATCATGGACGGACGGGGCATCCGCGCCGCCCTGGAGCTGGGCGCGAGCGCCGTGCAGATGGGCACC
GCCTTCGTCCTCTGTCCGGAGTCCTCGGCCAACGCCGCCTACCGCGAGGCGCTGAAGGGGCCGCGCGCGGCG
CGCACCGCGCTGACCGTGACCATGTCCGGGCGCAGCGCCCGCGGCCTGCCCAACCGGATGTTCTTCGATGCC
GCCGCGCCTGGAGTGCCGCCCTTGCCGGACTATCCGTTCGTCTACGACGCGACCAAAGCGTTGCAGACCGCC
GCTCTGACTCGCGGCAACCATGATTTCGCCGCCCAGTGGGCCGGCCAGGGCGCGGCGCTGGCGCGGGAGCTG
CCGGCCGCCGAACTGCTGCGCACGCTGGTCGAGGAACTGCGCGGCTGA
Translation:
MTDRFTRLLGIQQPIIQAPMLGVSTPALAAAVSNAGGLGSIAITGSAAEKGRALIREVRGLTDKPFNVNLFC
HRPGQADPARERAWLDYLKPLFAEFGAEPPARLNNIYLSFLEDPTLLPMLLEERPAAVSFHFGAPPRDQVRA
LQAAGIRVLVSATTPEEAALVEAAGADAVVAQGIEAGGHRGVFEPERGDAAIGTLALVRLLAARGSLPVVAA
GGIMDGRGIRAALELGASAVQMGTAFVLCPESSANAAYREALKGPRAARTALTVTMSGRSARGLPNRMFFDA
AAPGVPPLPDYPFVYDATKALQTAALTRGNHDFAAQWAGQGAALARELPAAELLRTLVEELRG*
AnnotationID:2016GeneID:2007
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2070, pfam03060
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17027




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA4202_CDS.cgi


    		




 
URL:

















    ReferenceID:21163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2007
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3481
                           PA4202_tr
                           translation of PA4202
                           351
                           98.57
                           98.57
                           0
                           1741.0
     

     
     
106633
                           gb|AAG07589.1|AE004836_8
                           (AE004836) hypothetical protein PA4202 [Pseudomonas aeruginosa PAO1]
                           351
                           98.57
                           98.57
                           0
                           1741.0
     

     
     
106635
                           emb|CAE36344.1|
                           (BX640426) putative 2-nitropropane dioxygenase [Bordetella parapertussis]
                           363
                           53.99
                           63.63
                           12
                           963.0
     

     
     
106634
                           emb|CAE31757.1|
                           (BX640440) putative 2-nitropropane dioxygenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           372
                           52.95
                           62.36
                           21
                           969.0
     

     
     
106636
                           gb|AAN53553.1|AE015495_7
                           (AE015495) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           364
                           44.50
                           58.51
                           18
                           725.0
     

     






      

          
GC ORFID: 45009How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4202Glimmer Score: 

          
Start: 4130104Stop: 4129049

          
Length: 1056


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4202 translation of PA4202Homolog Bit Score 675.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7032 (ORF: BLASTX 251.0), t_PA4202 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGACCGCTTCACGCGCCTGCTCGGCATCCAGCAGCCGATCATCCAGGCACCCATGCTCGGCGTCTCC 
ACGCCGGCGCTGGCCGCCGCCGTATCGAACGCCGGCGGGCTCGGTTCGATCGCCATCACCGGTAGCGCCGCC 
GAGAAAGGCCGGGCGCTGATCCGCGAGGTGCGCGGGCTGACCGACAAGCCATTCAACGTCAACCTGTTCTGC 
CACCGCCCGGGGCAGGCCGACCCGGCCCGCGAGCGCGCCTGGCTGGACTACCTGAAGCCGCTGTTCGCCGAG 
TTCGGCGCCGAGCCGCCGGCGCGCCTGAACAACATCTACCTGAGCTTCCTCGAAGACCCGACCCTGCTGCCG 
ATGCTGCTGGAAGAGCGGCCGGCGGCGGTCAGCTTCCATTTCGGCGCGCCGCCCCGCGACCAGGTTCGCGCG 
TTGCAGGCGGCGGGCATCCGCGTACTGGTCAGTGCCACCACGCCGGAGGAAGCGGCTCTGGTGGAGGCCGCC 
GGCGCCGATGCGGTGGTCgccCAGGGCATCGAGGCCGGTGGCCATCGCgggGTGTTCGAGCCGGAGCGCGGC 
GACGCCGCCATCGGCACCCTGGCGCTGGTCCGCCTGCTGGCGGCGCGCGGTTCGCTACCGGTGGTCGCTGCC 
GGCGGGATCATGGACGGACGGGGCATCCGCGCCGCCCTGGAGCTGGGCGCGAGCGCCGTGCAGATGGGCACC 
GCCTTCGTCCTCTGTCCGGAGTCCTCGGCCAACGCCGCCTACCGCGAGGCGCTGAAGGGGCCGCGCGCGGCG 
CGCACCGCGCTGACCGTGACCATGTCCGGGCGCAGCGCCCGCGGCCTGCCCAACCGGATGTTCTTCGATGCC 
GCCGCGCCTGGAGTGCCGCCCTTGCCGGACTATCCGTTCGTCTACGACGCGACCAAAGCGTTGCAGACCGCC 
GCTCTGACTCGCGGCAACCATGATTTCGCCGCCCAGTGGGCCGGCCAGGGCGCGGCGCTGGCGCGGGAGCTG 
CCGGCCGCCGAACTGCTGCGCACGCTGGTCGAGGAACTGCGCGGCTGA