ViewGene
Locus Name:
GeneID:
Location:

GeneID:2006
TrivialName: PA14_12330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12330
PAO1 Ortholog Locus:PA3981
Sequence Length:1023
Protein Length:340
Start: 1063568
Stop: 1062546
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07368.1|AE004816_4 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 339/340 (99%), Positives = 340/340 (100%)
Sequence:
TTGAACGCCCCCCAGGAACTTCATCGCTTTATCCTCGAGCCGTTCGACGCCCGCAGCTTCGCGACACTTTGC
GGGCAGTTCGACGAGCATCTCCACCAGATCGAGAAACGCCTCGACATCGAGATCCGCAACCGCGGCAACCAG
TTCGAACTGGCCGGCGAACCGCGCCGGACCAAGGTCGCCGAACGCCTGCTGCAGCGTCTCTACCGCGAGGCG
CAGAACGGCACCGATCTCACCCCCGACACCGTGCACCTGTACCTGCAGGAGTCCGGCCTGGAAGACCTCGAG
GAATTGCAGAGCGCGCCGCAGGTCACCCTGAAGTCGCGCAAGGCGCACATCCGCCCGCGCGGCGCCAACCAG
CAGCGCTACGTCAAGGCGATCCTCGACCACGACATCAACTTCGGCATCGGTCCGGCTGGCACCGGCAAGACC
TACCTCGCCGTGGCCTGCGCCGTCGACGCCCTGGAGCGCGAGCAGATCCGCCGCATCCTGCTGGTGCGCCCG
GCGGTCGAGGCCGGCGAGAAGCTCGGTTTCCTTCCCGGCGACCTGTCGCAGAAGATCGACCCCTACCTGCGC
CCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAACACGTGGCCAAGCTGATCGAGCGCAACGTCATC
GAGGTCGCGCCGCTGGCCTACATGCGCGGGCGCACGCTGAACAACAGCTTCATCATCCTCGACGAGAGCCAG
AACACCACCGTCGAGCAGATGAAGATGTTCCTCACCCGGATCGGCTTCGGCTCCACCGCGGTGATCACCGGC
GACGTCACCCAGGTCGACCTGCCCCGCGGCACCCGCTCCGGCCTCAAGCACGTGATCGAGGTCCTGCAGGAC
GTCCCCGGCATCAGCTTCACCCATTTCAAGCCCAAGGATGTGGTCCGCCACCCGCTGGTGCAGCGTATCGTC
GAAGCCTACGAGCGCCATGAGAACCGCCAGCAAGGCCAGGTGCGGCCGGTCGAGGGAACGGGCAAGGGCGGT
CACGATGCCGCTTGA
Translation:
MNAPQELHRFILEPFDARSFATLCGQFDEHLHQIEKRLDIEIRNRGNQFELAGEPRRTKVAERLLQRLYREA
QNGTDLTPDTVHLYLQESGLEDLEELQSAPQVTLKSRKAHIRPRGANQQRYVKAILDHDINFGIGPAGTGKT
YLAVACAVDALEREQIRRILLVRPAVEAGEKLGFLPGDLSQKIDPYLRPLYDALYEMLGFEHVAKLIERNVI
EVAPLAYMRGRTLNNSFIILDESQNTTVEQMKMFLTRIGFGSTAVITGDVTQVDLPRGTRSGLKHVIEVLQD
VPGISFTHFKPKDVVRHPLVQRIVEAYERHENRQQGQVRPVEGTGKGGHDAA*
AnnotationID:2015GeneID:2006
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 17:05:11
Gene Name:
Confidence Code:2
GeneProduct:PhoH family protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1702,pfam02562,COG1875
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Accession: dbj|BAA35315.1|  (D90706) PhoH protein homolog. [Escherichia coli K12]
Length: 362
PctIdentity: 56.90
PctSimilarity: 69.33
Gaps: 25   Score: 1002.0







 
Structural Features:
gnl|CDD|11413 COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted
ATPase [Signal transduction mechanisms]
Length = 348
Score =  411 bits (1059), Expect = e-116
Identities = 169/341 (49%), Positives = 206/341 (60%), Gaps = 7/341 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34080




  
Author/Investigator(s):
        Kim SK, Makino K, Amemura M, Shinagawa H, Nakata A.





  
Title:
        Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli.




  
PubMed:
        8444794


MedLine:
        93186698




    
Source:
J Bacteriol. 1993 Mar;175(5):1316-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&dopt=Citation&list_uids=8444794









           
Homologs By Global Alignment 

           

       



     
Gene ID:2006
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3480
                           PA3981_tr
                           translation of PA3981
                           340
                           99.70
                           99.99
                           0
                           1742.0
     

     
     
106525
                           gb|AAG07368.1|AE004816_4
                           (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           340
                           99.41
                           99.99
                           0
                           1740.0
     

     
     
106526
                           gb|AAN70356.1|AE016677_7
                           (AE016792) PhoH family protein [Pseudomonas putida KT2440]
                           341
                           78.88
                           87.39
                           10
                           1358.0
     

     
     
106527
                           gb|AAO58234.1|
                           (AE016873) PhoH-like protein [Pseudomonas syringae pv. tomato str. DC3000]
                           347
                           76.08
                           85.30
                           14
                           1326.0
     

     
     
106541
                           gb|AAM37313.1|
                           (AE011883) ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           342
                           59.06
                           72.22
                           16
                           1007.0
     

     






      

          
GC ORFID: 45008How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3981Glimmer Score: 

          
Start: 3890370Stop: 3891392

          
Length: 1023


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3981 translation of PA3981Homolog Bit Score 675.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5727 (ORF: BLASTX 518.0), t_PA3981 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAACGCCCCCCAGGAACTTCATCGCTTTATCCTCGAGCCGTTCGACGCCCGCAGCTTCGCGACACTTTGC 
GGGCAGTTCGACGAGCATCTCCACCAGATCGAGAAACGCCTCGACATCGAGATCCGCAACCGCGGCAACCAG 
TTCGAACTGGCCGGCGAACCGCGCCGGACCAAGGTCGCCGAACGCCTGCTGCAGCGTCTCTACCGCGAGGCG 
CAGAACGGCACCGATCTCACCCCCGACACCGTGCACCTGTACCTGCAGGAGTCCGGCCTGGAAGACCTCGAG 
GAATTGCAGAGCGCGCCGCAGGTCACCCTGAAGTCGCGCAAGGCGCACATCCGCCCGCGCGGCGCCAACCAG 
CAGCGCTACGTCAAGGCGATCCTCGACCACGACATCAACTTCGGCATCGGTCCGGCTGGCACCGGCAAGACC 
TACCTCGCCGTGGCCTGCGCCGTCGACGCCCTGGAGCGCGAGCAGATCCGCCGCATCCTGCTGGTGCGCCCG 
GCGGTCGAGGCCGGCGAGAAGCTCGGTTTCCTTCCCGGCGACCTGTCGCAGAAGATCGACCCCTACCTGCGC 
CCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAACACGTGGCCAAGCTGATCGAGCGCAACGTCATC 
GAGGTCGCGCCGCTGGCCTACATGCGCGGGCGCACGCTGAACAACAGCTTCATCATCCTCGACGAGAGCCAG 
AACACCACCGTCGAGCAGATGAAGATGTTCCTCACCCGGATCGGCTTCGGCTCCACCGCGGTGATCACCGGC 
GACGTCACCCAGGTCGACCTGCCCCGCGGCACCCGCTCCGGCCTCAAGCACGTGATCGAGGTCCTGCAGGAC 
GTCCCCGGCATCAGCTTCACCCATTTCAAGCCCAAGGATGTGGTCCGCCACCCGCTGGTGCAGCGTATCGTC 
GAAGCCTACGAGCGCCATGAGAACCGCCAGCAAGGCCAGGTGCGGCCGGTCGAGGGAACGGGCAAGGGCGGT 
CACGATGCCGCTTGA