ViewGene
Locus Name:
GeneID:
Location:

GeneID:2005
TrivialName: PA14_02360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02360
PAO1 Ortholog Locus:PA0186
Sequence Length:1062
Protein Length:353
Start: 211201
Stop: 212262
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03576.1|AE004456_7 (AE004456) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 353/353 (100%), Positives = 353/353 (100%)
Sequence:
ATGAAAGCGCTTACGTCTTCCCTGCTCGGTCTGTTCGCCGCGCCTGTCCTCGCCGGCCTGCTCGGTGCCTAC
GTGCCGCTGGCGAGCGCCGCTCCGCCGAAGGAAATCCGCATCGCGGTGCCGGACGTCAGCGCCGGCAGTTCG
CACTCGGGCGGCGGCGTGGTCGACGTGCTCTACACCCGGCAGTTGCTGGAGAAGGAGTTCGCCAACGACGGC
ATCGCGGTGAAATGGAGCTTCTTCAAGGGCGCCGGTCCGGTGGTCAACGAAGCGTTCGCCAACGGCCAGGTG
GACTTCGCCTACCTCGGCGACCTGGCGGCGATCATCGGCAAGTCCGGAGGCCTGGACAGCCGCCTGCTGGCC
GCTACCGCGCGAGGGGTCAACCACTATCTCGGCGTGCAGCCGGGCTCCGGGATCAAGACCCTGGAGGATCTC
AAGGGCAAGCGCGTAGGCATCTTCCGCGGCACCGCCAGCCAGTTGTCGTTCGACAATGCCCTGGCCAGCGTT
GGTCTCAGCGAGAAGGACCTGAAGGTGATCAACCTCGATTTCAGCGCCGCCCTGTCCGCCCTCGCAGCCAGG
CAGATCGATGCCACCTGGGGCCTGGCCGGACTGTTCGCCCTGCGCGACCGCGGGCTCGCGGAAATTCCGCTG
AGCACCCGCGACTTGAACGGCGCCGGCACCCTGCAGGCGCTGCTGGTCGGCTCCGGGGCTTTCGTCGATGCC
CATCCGGACATCACCGAGCGGCTGCTCAAGGTGCAGTTGCAGGCCCAGGACTGGCTGGCCCGCGAGGAGAAC
CGCGACGCCTACATCGAACTGGTGTCGAAGCAGGCCAGCTACCCGGTGGTGATCCTGCAGAGCGAGTACCGT
GGCCGCAAGCTGGGCGACGCCCTGTCGCCGCGCCTGGACGCCGATTTCCTTGGCCGGCTGGATGCTTCGATC
CAGGCGGCCAAGCGTTTCGGCCTGATCCGTCGCGAATTCAGCGCCGAGCAGTGGGCCGCGCCGGAACTGCTG
GAGGCGGCCGGCAAGCTGGCGAAGGCCAAGGCCGTGGCGCAGGCGGCGGAGTGA
Translation:
MKALTSSLLGLFAAPVLAGLLGAYVPLASAAPPKEIRIAVPDVSAGSSHSGGGVVDVLYTRQLLEKEFANDG
IAVKWSFFKGAGPVVNEAFANGQVDFAYLGDLAAIIGKSGGLDSRLLAATARGVNHYLGVQPGSGIKTLEDL
KGKRVGIFRGTASQLSFDNALASVGLSEKDLKVINLDFSAALSALAARQIDATWGLAGLFALRDRGLAEIPL
STRDLNGAGTLQALLVGSGAFVDAHPDITERLLKVQLQAQDWLAREENRDAYIELVSKQASYPVVILQSEYR
GRKLGDALSPRLDADFLGRLDASIQAAKRFGLIRREFSAEQWAAPELLEAAGKLAKAKAVAQAAE*
AnnotationID:2014GeneID:2005
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 17:05:49
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA0186, atsR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sulfate ester binding protein
Functional Category Confidence Code:5
COGs:COG0715
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD31785.1|AF126201_3 (AF126201) AtsR [Pseudomonas putida]
          Length = 347

 Score =  380 bits (977), Expect = e-105
 Identities = 194/336 (57%), Positives = 241/336 (71%)








 
Structural Features:
COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, 
periplasmic components 
[Inorganic ion transport and metabolism]
CD-Length = 335 residues,  96.4% aligned
Score =  126 bits (316), Expect = 5e-30
Identities = 100/333 (30%), Positives = 147/333 (44%), Gaps = 16/333 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33556




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2005_cdd.html


    		




 
URL:

















    ReferenceID:35485




  
Author/Investigator(s):
        Hummerjohann J, Laudenbach S, Retey J, Leisinger T, Kertesz MA.





  
Title:
        The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon.




  
PubMed:
        10715018


MedLine:
        




    
Source:
J Bacteriol. 2000 Apr;182(7):2055-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10715018









           
Homologs By Global Alignment 

           

       



     
Gene ID:2005
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3479
                           PA0186_tr
                           translation of PA0186
                           353
                           99.99
                           99.99
                           0
                           1744.0
     

     
     
106520
                           gb|AAG03576.1|AE004456_7
                           (AE004456) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           353
                           99.99
                           99.99
                           0
                           1744.0
     

     
     
106521
                           emb|CAA88422.1|
                           (Z48540) putative sulfate ester binding protein [Pseudomonas aeruginosa]
                           353
                           99.99
                           99.99
                           0
                           1744.0
     

     
     
106522
                           gb|AAD31785.1|AF126201_3
                           (AF126201) AtsR [Pseudomonas putida]
                           353
                           55.80
                           69.68
                           6
                           977.0
     

     
     
106523
                           gb|AAD31782.1|AF126200_4
                           (AF126200) periplasmic sulfonate-binding protein AsfC [Pseudomonas putida]
                           360
                           43.33
                           59.44
                           19
                           736.0
     

     






      

          
GC ORFID: 45007How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0186Glimmer Score: 

          
Start: 6012540Stop: 6013601

          
Length: 1062


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0186 translation of PA0186Homolog Bit Score 676.0

          
Other Homologs:  t_PA0186 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCGCTTACGTCTTCCCTGCTCGGTCTGTTCGCCGCGCCTGTCCTCGCCGGCCTGCTCGGTGCCTAC 
GTGCCGCTGGCGAGCGCCGCTCCGCCGAAGGAAATCCGCATCGCGGTGCCGGACGTCAGCGCCGGCAGTTCG 
CACTCGGGCGGCGGCGTGGTCGACGTGCTCTACACCCGGCAGTTGCTGGAGAAGGAGTTCGCCAACGACGGC 
ATCGCGGTGAAATGGAGCTTCTTCAAGGGCGCCGGTCCGGTGGTCAACGAAGCGTTCGCCAACGGCCAGGTG 
GACTTCGCCTACCTCGGCGACCTGGCGGCGATCATCGGCAAGTCCGGAGGCCTGGACAGCCGCCTGCTGGCC 
GCTACCGCGCGAGGGGTCAACCACTATCTCGGCGTGCAGCCGGGCTCCGGGATCAAGACCCTGGAGGATCTC 
AAGGGCAAGCGCGTAGGCATCTTCCGCGGCACCGCCAGCCAGTTGTCGTTCGACAATGCCCTGGCCAGCGTT 
GGTCTCAGCGAGAAGGACCTGAAGGTGATCAACCTCGATTTCAGCGCCGCCCTGTCCGCCCTCGCAGCCAGG 
CAGATCGATGCCACCTGGGGCCTGGCCGGACTGTTCGCCCTGCGCGACCGCGGGCTCGCGGAAATTCCGCTG 
AGCACCCGCGACTTGAACGGCGCCGGCACCCTGCAGGCGCTGCTGGTCGGCTCCGGGGCTTTCGTCGATGCC 
CATCCGGACATCACCGAGCGGCTGCTCAAGGTGCAGTTGCAGGCCCAGGACTGGCTGGCCCGCGAGGAGAAC 
CGCGACGCCTACATCGAACTGGTGTCGAAGCAGGCCAGCTACCCGGTGGTGATCCTGCAGAGCGAGTACCGT 
GGCCGCAAGCTGGGCGACGCCCTGTCGCCGCGCCTGGACGCCGATTTCCTTGGCCGGCTGGATGCTTCGATC 
CAGGCGGCCAAGCGTTTCGGCCTGATCCGTCGCGAATTCAGCGCCGAGCAGTGGGCCGCGCCGGAACTGCTG 
GAGGCGGCCGGCAAGCTGGCGAAGGCCAAGGCCGTGGCGCAGGCGGCGGAGTGA