ViewGene
Locus Name:
GeneID:
Location:

GeneID:2004
TrivialName: PA14_71110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71110
PAO1 Ortholog Locus:PA5384
Sequence Length:996
Protein Length:331
Start: 6336265
Stop: 6335270
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08769.1|AE004951_3 (AE004951) probable lipolytic enzyme [Pseudomonas aeruginosa PAO1]
Identities = 331/331 (100%), Positives = 331/331 (100%)
Sequence:
ATGGCTGCGAAGTATCCGCTGTCTCCGGCGATGTGGCGCTTCGTCGAGCACAGCCGGGCGTTCGCCAGCGAC
AGTCCGCGCCTGGATGCGCAACGTGCGGCCTACGCGCGGATGTGCCAGGCGTTCGCGCCGCCGCGCCCGGCC
GGTTTGCGGGTGCTCGACTCCTGCTTGCCGGCCGCGCCGCCGGTGCGCGTGCGCCGCTATCGCCCCGACCGC
CCGGCACCGCCCGGTGGCTGGCCGGCGCTGCTCTACCTGCACGGTGGCGGCTGGATGCTCGGCGGCCTCGAT
TCACACGATTTCATCTGCGCCGACCTGGCTGCGCGCCTGGGCCTGCTGGTGCTGGCGGTGGATTACCGACTG
GCGCCGGAGCATCCATTCCCGGCGGCATTGCAGGATTGCCTGCGTGCCTGGCAGGCGCTGAGCCTGGGCGAG
CTGGACGAAGCGCTGGATGGGCGACGCCTGCTGGTGGCCGGCGACAGCGCCGGCGGCAACCTGGCGGCGGCG
CTGTGCCTGGCCCTGCGCGATGGCGGCGCGCCGTCGCCGGCCGCGCAGATATTGCTCTATCCCTTGCTGTCC
GCCGCGCCATCGCCCTCGCGGATCGACTGCGCCGACGCGCCGTTGCTCGGCCTCGGCGATGTGCAGGCGTGC
CTGGACGCCTACCTGCCGCTGGCGGCGCTGCACCGACAGCCGCTGGCGCTGCCCCTGGAGGCCGCTGATTTC
ACTGGCCTGCCGCCGGCCTTCGTGGCGGTCGCCGAATTCGATCCGCTGCGCGACGACGGCGAGCGCTATGGC
GCAGCGCTACGCGCGGCGGGTGGCGAGGCAGGGTTCTATCCGGGAAGCGGGCTGGTCCATGGCTGCCTGCGC
GGCCACGGCATCGACGAGGTGGAAGCCCTGCACGAGGCCTTGCGACGGGCCGTGCAGGGCTTCCTGGCGGAG
GACTCAGGCGAGCGCCAGGCGGGTGAGGAATCCACCGCCGAGCACCAGCCAGGCGAATAG
Translation:
MAAKYPLSPAMWRFVEHSRAFASDSPRLDAQRAAYARMCQAFAPPRPAGLRVLDSCLPAAPPVRVRRYRPDR
PAPPGGWPALLYLHGGGWMLGGLDSHDFICADLAARLGLLVLAVDYRLAPEHPFPAALQDCLRAWQALSLGE
LDEALDGRRLLVAGDSAGGNLAAALCLALRDGGAPSPAAQILLYPLLSAAPSPSRIDCADAPLLGLGDVQAC
LDAYLPLAALHRQPLALPLEAADFTGLPPAFVAVAEFDPLRDDGERYGAALRAAGGEAGFYPGSGLVHGCLR
GHGIDEVEALHEALRRAVQGFLAEDSGERQAGEESTAEHQPGE*
AnnotationID:2013GeneID:2004
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative esterase/lipase
Cell Localization:()
Synonyms:PA5384
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0657
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0657, Aes, Esterase/lipase [Lipid metabolism]
CD-Length = 312 residues,  94.9% aligned
Score =  186 bits (473), Expect = 3e-48
Identities = 125/297 (42%), Positives = 156/297 (52%), Gaps = 5/297 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4011




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21157




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34721




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2004_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3478
                           PA5384_tr
                           translation of PA5384
                           331
                           99.99
                           99.99
                           0
                           1743.0
     

     
     
106505
                           gb|AAG08769.1|AE004951_3
                           (AE004951) probable lipolytic enzyme [Pseudomonas aeruginosa PAO1]
                           331
                           99.99
                           99.99
                           0
                           1743.0
     

     
     
106506
                           dbj|BAB51140.1|
                           (AP003004) lipase (esterase) [Mesorhizobium loti]
                           354
                           38.41
                           49.71
                           58
                           495.0
     

     
     
106507
                           emb|CAC46841.1|
                           (AL591790) PUTATIVE ESTERASE/LIPASE PROTEIN [Sinorhizobium meliloti]
                           340
                           37.35
                           48.23
                           42
                           465.0
     

     
     
106508
                           dbj|BAC49549.1|
                           (AP005950) bll4284 [Bradyrhizobium japonicum USDA 110]
                           366
                           33.33
                           42.34
                           86
                           444.0
     

     






      

          
GC ORFID: 45006How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5384Glimmer Score: 

          
Start: 5599954Stop: 5598959

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5384 translation of PA5384Homolog Bit Score 676.0

          
Other Homologs:  t_PA5384 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGCGAAGTATCCGCTGTCTCCGGCGATGTGGCGCTTCGTCGAGCACAGCCGGGCGTTCGCCAGCGAC 
AGTCCGCGCCTGGATGCGCAACGTGCGGCCTACGCGCGGATGTGCCAGGCGTTCGCGCCGCCGCGCCCGGCC 
GGTTTGCGGGTGCTCGACTCCTGCTTGCCGGCCGCGCCGCCGGTGCGCGTGCGCCGCTATCGCCCCGACCGC 
CCGGCACCGCCCGGTGGCTGGCCGGCGCTGCTCTACCTGCACGGTGGCGGCTGGATGCTCGGCGGCCTCGAT 
TCACACGATTTCATCTGCGCCGACCTGGCTGCGCGCCTGGGCCTGCTGGTGCTGGCGGTGGATTACCGACTG 
GCGCCGGAGCATCCATTCCCGGCGGCATTGCAGGATTGCCTGCGTGCCTGGCAGGCGCTGAGCCTGGGCGAG 
CTGGACGAAGCGCTGGATGGGCGACGCCTGCTGGTGGCCGGCGACAGCGCCGGCGGCAACCTGGCGGCGGCG 
CTGTGCCTGGCCCTGCGCGATGGCGGCGCGCCGTCGCCGGCCGCGCAGATATTGCTCTATCCCTTGCTGTCC 
GCCGCGCCATCGCCCTCGCGGATCGACTGCGCCGACGCGCCGTTGCTCGGCCTCGGCGATGTGCAGGCGTGC 
CTGGACGCCTACCTGCCGCTGGCGGCGCTGCACCGACAGCCGCTGGCGCTGCCCCTGGAGGCCGCTGATTTC 
ACTGGCCTGCCGCCGGCCTTCGTGGCGGTCGCCGAATTCGATCCGCTGCGCGACGACGGCGAGCGCTATGGC 
GCAGCGCTACGCGCGGCGGGTGGCGAGGCAGGGTTCTATCCGGGAAGCGGGCTGGTCCATGGCTGCCTGCGC 
GGCCACGGCATCGACGAGGTGGAAGCCCTGCACGAGGCCTTGCGACGGGCCGTGCAGGGCTTCCTGGCGGAG 
GACTCAGGCGAGCGCCAGGCGGGTGAGGAATCCACCGCCGAGCACCAGCCAGGCGAATAG