ViewGene

Locus Name:
GeneID:
Location:

GeneID:2003
TrivialName: PA14_62130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62130
PAO1 Ortholog Locus:PA4694
Sequence Length:1017
Protein Length:338
Start: 5545403
Stop: 5544387
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08080.1|AE004883_4 (AE004883) ketol-acid reductoisomerase [Pseudomonas aeruginosa PAO1]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGCGCGTTTTCTACGATAAAGACTGTGACCTCTCGATCATCCAGGGCAAGAAAGTTGCCATCATCGGCTAC
GGCTCCCAGGGCCACGCCCATGCCTGCAACCTGAAGGACTCCGGCGTCGACGTCACCGTGGGCCTGCGTAGC
GGCTCCGCCACCGTGGCCAAGGCCGAAGCGCACGGTCTGAAGGTTGCCGACGTGAAGACCGCCGTCGCCGCA
GCCGACGTGGTCATGATCCTCACCCCGGACGAGTTCCAGGGCCGCCTGTACAAGGAAGAGATCGAGCCGAAC
CTGAAGAAGGGCGCCACCCTGGCCTTCGCTCACGGCTTCTCCATCCACTACAACCAGGTCGTCCCGCGCGCC
GACCTCGACGTGATCATGATCGCGCCGAAGGCCCCGGGTCACACCGTGCGTTCCGAGTTCGTCAAGGGCGGT
GGCATCCCTGACCTGATCGCCATCTACCAGGACGCTTCCGGCAACGCCAAGAACGTCGCCCTGTCCTACGCC
TGCGGCGTCGGCGGCGGTCGTACCGGTATCATCGAAACCACCTTCAAGGACGAGACCGAAACCGACCTGTTC
GGTGAGCAGGCCGTTCTCTGCGGTGGTTGCGTCGAGCTGGTCAAGGCCGGTTTCGAAACCCTGGTCGAAGCC
GGTTACGCGCCGGAAATGGCCTACTTCGAGTGCCTGCACGAGCTGAAGCTGATCGTCGACCTGATGTACGAA
GGCGGCATCGCCAACATGAACTACTCCATCTCCAACAATGCCGAATACGGTGAGTACGTAACCGGTCCGGAG
GTGATCAACGCCGAGTCCCGTGCTGCCATGCGCAACGCCCTGAAGCGCATCCAGGACGGCGAGTACGCGAAA
ATGTTCATTACCGAAGGTGCGGCCAACTACCCGTCGATGACTGCCTACCGCCGCAACAACGCCGCTCACCCG
ATCGAGCAGATCGGCGAGAAGCTGCGCGCGATGATGCCGTGGATCGCAGCCAACAAGATCGTCGACAAGAGC
AAGAACTAA
Translation:
MRVFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAA
ADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGG
GIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEA
GYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAK
MFITEGAANYPSMTAYRRNNAAHPIEQIGEKLRAMMPWIAANKIVDKSKN*
AnnotationID:2012GeneID:2003
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 14:02:22
Gene Name:ilvC
Confidence Code:2
GeneProduct:ketol-acid reductoisomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0059,pfam01450
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:1.1.1.86
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70251.1|AE016665_4 (AE016791) ketol-acid reductoisomerase [Pseudomonas putida KT2440]
          Length = 338

 Score =  631 bits (1627), Expect = e-180
 Identities = 316/338 (93%), Positives = 325/338 (96%)

>gb|AAO54517.1| (AE016859) ketol-acid reductoisomerase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 338

 Score =  626 bits (1614), Expect = e-179
 Identities = 312/338 (92%), Positives = 322/338 (95%)

>gb|AAD32178.1|AF125563_3 (AF125563) ketol-acid reductoisomerase [Neisseria meningitidis]
          Length = 337

 Score =  506 bits (1304), Expect = e-143
 Identities = 248/338 (73%), Positives = 285/338 (84%), Gaps = 1/338 (0%)
Structural Features:
COG0059, IlvC, Ketol-acid reductoisomerase 
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 338 residues,  99.4% aligned
Score =  535 bits (1380), Expect = 3e-153
Identities = 208/336 (61%), Positives = 260/336 (77%)

pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain. 
CD-Length = 146 residues,  99.3% aligned
Score =  212 bits (542), Expect = 4e-56
Identities = 84/145 (57%), Positives = 108/145 (74%)
Genomic Context:
Comment:
ReferenceID:4009
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21155
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37605
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2003_cdd.html
URL:
ReferenceID:37753
Author/Investigator(s): Wek RC, Hatfield GW.
Title: Nucleotide sequence and in vivo expression of the ilvY and ilvC genes in Escherichia coli K12. Transcription from divergent overlapping promoters.
PubMed: 3003115
MedLine:
Source:
J Biol Chem. 1986 Feb 15;261(5):2441-50.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3003115
ReferenceID:37754
Author/Investigator(s): Rieble S, Beale SI.
Title: Structure and expression of a cyanobacterial ilvC gene encoding acetohydroxyacid isomeroreductase.
PubMed: 1459938
MedLine:
Source:
J Bacteriol. 1992 Dec;174(24):7910-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1459938
Homologs By Global Alignment
Gene ID:2003

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3477 PA4694_tr translation of PA4694 338 99.99 99.99 0 1744.0
106399 gb|AAG08080.1|AE004883_4 (AE004883) ketol-acid reductoisomerase [Pseudomonas aeruginosa PAO1] 338 99.99 99.99 0 1744.0
106400 gb|AAN70251.1|AE016665_4 (AE016791) ketol-acid reductoisomerase [Pseudomonas putida KT2440] 338 93.49 96.15 0 1627.0
106401 gb|AAO54517.1| (AE016859) ketol-acid reductoisomerase [Pseudomonas syringae pv. tomato str. DC3000] 338 92.30 95.26 0 1614.0
106402 gb|AAQ58264.1| (AE016912) ketol-acid reductoisomerase [Chromobacterium violaceum ATCC 12472] 338 76.03 85.79 0 1341.0
GC ORFID: 45005How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4694Glimmer Score:
Start: 4809083Stop: 4808067
Length: 1017
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4694 translation of PA4694Homolog Bit Score 676.0
Other Homologs: psyr_15may02_Scaffold19_revised_gene2875 (ORF: BLASTX 626.0), t_PA4694 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCGTTTTCTACGATAAAGACTGTGACCTCTCGATCATCCAGGGCAAGAAAGTTGCCATCATCGGCTAC
GGCTCCCAGGGCCACGCCCATGCCTGCAACCTGAAGGACTCCGGCGTCGACGTCACCGTGGGCCTGCGTAGC
GGCTCCGCCACCGTGGCCAAGGCCGAAGCGCACGGTCTGAAGGTTGCCGACGTGAAGACCGCCGTCGCCGCA
GCCGACGTGGTCATGATCCTCACCCCGGACGAGTTCCAGGGCCGCCTGTACAAGGAAGAGATCGAGCCGAAC
CTGAAGAAGGGCGCCACCCTGGCCTTCGCTCACGGCTTCTCCATCCACTACAACCAGGTCGTCCCGCGCGCC
GACCTCGACGTGATCATGATCGCGCCGAAGGCCCCGGGTCACACCGTGCGTTCCGAGTTCGTCAAGGGCGGT
GGCATCCCTGACCTGATCGCCATCTACCAGGACGCTTCCGGCAACGCCAAGAACGTCGCCCTGTCCTACGCC
TGCGGCGTCGGCGGCGGTCGTACCGGTATCATCGAAACCACCTTCAAGGACGAGACCGAAACCGACCTGTTC
GGTGAGCAGGCCGTTCTCTGCGGTGGTTGCGTCGAGCTGGTCAAGGCCGGTTTCGAAACCCTGGTCGAAGCC
GGTTACGCGCCGGAAATGGCCTACTTCGAGTGCCTGCACGAGCTGAAGCTGATCGTCGACCTGATGTACGAA
GGCGGCATCGCCAACATGAACTACTCCATCTCCAACAATGCCGAATACGGTGAGTACGTAACCGGTCCGGAG
GTGATCAACGCCGAGTCCCGTGCTGCCATGCGCAACGCCCTGAAGCGCATCCAGGACGGCGAGTACGCGAAA
ATGTTCATTACCGAAGGTGCGGCCAACTACCCGTCGATGACTGCCTACCGCCGCAACAACGCCGCTCACCCG
ATCGAGCAGATCGGCGAGAAGCTGCGCGCGATGATGCCGTGGATCGCAGCCAACAAGATCGTCGACAAGAGC
AAGAACTAA