ViewGene
Locus Name:
GeneID:
Location:

GeneID:2002
TrivialName: PA14_12200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12200
PAO1 Ortholog Locus:PA3989
Sequence Length:1038
Protein Length:345
Start: 1054682
Stop: 1053645
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07376.1|AE004816_12 (AE004816) DNA polymerase III, delta subunit [Pseudomonas aeruginosa PAO1]
Identities = 344/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGAAGCTGACTCCCGCGCAACTCGCCAAGCACCTCCAGGGCCCCCTGGCGCCCGTCTATGTCGTCAGCGGC
GATGAACCGCTGCTCTGCCAGGAAGCCTGCGATGCCATTCGCCAGGCCTGCCGCGAGCGCGACTTCGGCGAG
CGCCAGGTATTCAATGCCGAAGCCAACTTCGATTGGGGCCTGCTGCTGGAGGCCGGCGCCAGCCTGTCGCTG
TTCGCCGAGAAGCGCCTGATCGAACTGCGCCTGCCCTCCGGCAAGCCCGGCGACAAAGGCGCGGCAATTCTC
CAGGAATACCTGCAACGGCCGCCGGAAGACACCGTGCTCCTGCTCAGCCTGCCCAAGCTCGATGGCAGCACG
CAGAAGACCAAGTGGGCCAAGGCCCTGATCGATGGCAACGCCGCGCAGTTCATCCAGGTCTGGCCGGTCGAC
GTCCACCAGTTGCCGCAGTGGATTCGCCAGCGCCTGTCCCAGGCCGGCCTGTCCGCCAGCCCCGAAGCCCTG
GAGCTGATCGCCGCGCGCGTGGAAGGCAACCTGCTCGCCGCCGCCCAGGAAATCGAAAAGCTCAAGCTGCTC
GCCGAGGGCAACCAGATCGACGCCGCCACCGTACAGGCCGCGGTCGCCGACAGCGCACGCTTCGATGTCTTC
GGCCTGATCGACGCTGCCCTTGGCGGTGAAGCGGCCCACGCCCTGCGCATCCTGGAAGGACTGCGCGGCGAA
GGCATCGAGCCGCCGGTGATCCTCTGGGGCCTGGCCCGCGAGATCCGCCTGCTGGCGGGTCTGTCCCAGCAA
TACGGCCAGGGCATACCGCTGGAGAAAGCCTTCGCCCAGGCGCGTCCGCCGGTCTGGGACAAGCGCCGTCCG
CTGCTGACCCGTGCCCTGCAACGCCACTCCAGCAGCCGCTGGAACCAGATGCTGCGGGATGCCCAGTTGATC
GACGCGCAGATCAAGGGACAGGCACCCGGCAGCCCCTGGAGCGGTCTCTCGCTTCTCGCCCTGAGCCTCGCC
GGCCAGCGTCTCGGCCTGCCGGCAGCCTGA
Translation:
MKLTPAQLAKHLQGPLAPVYVVSGDEPLLCQEACDAIRQACRERDFGERQVFNAEANFDWGLLLEAGASLSL
FAEKRLIELRLPSGKPGDKGAAILQEYLQRPPEDTVLLLSLPKLDGSTQKTKWAKALIDGNAAQFIQVWPVD
VHQLPQWIRQRLSQAGLSASPEALELIAARVEGNLLAAAQEIEKLKLLAEGNQIDAATVQAAVADSARFDVF
GLIDAALGGEAAHALRILEGLRGEGIEPPVILWGLAREIRLLAGLSQQYGQGIPLEKAFAQARPPVWDKRRP
LLTRALQRHSSSRWNQMLRDAQLIDAQIKGQAPGSPWSGLSLLALSLAGQRLGLPAA*
AnnotationID:2011GeneID:2002
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:29
Gene Name:holA
Confidence Code:2
GeneProduct:DNA polymerase III, delta subunit
Cell Localization:()
Synonyms:holA, PA3989
Cell Localization Confidence Code:5
MolecularFunction:DNA polymerase
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1466,pfam06144
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:
Near leuS, as in E. coli.






   
Comment:


















    ReferenceID:4007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34100




  
Author/Investigator(s):
        Carter JR, Franden MA, Aebersold R, McHenry CS.





  
Title:
        Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme.




  
PubMed:
        1400251


MedLine:
        




    
Source:
J Bacteriol. 1992 Nov;174(21):7013-25.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1400251









           
Homologs By Global Alignment 

           

       



     
Gene ID:2002
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3476
                           PA3989_tr
                           translation of PA3989
                           345
                           99.71
                           99.71
                           0
                           1745.0
     

     
     
106385
                           gb|AAG07376.1|AE004816_12
                           (AE004816) DNA polymerase III, delta subunit [Pseudomonas aeruginosa PAO1]
                           345
                           99.71
                           99.71
                           0
                           1745.0
     

     
     
106386
                           gb|AAN70365.1|AE016678_6
                           (AE016792) DNA polymerase III, delta subunit [Pseudomonas putida KT2440]
                           345
                           76.81
                           87.24
                           0
                           1380.0
     

     
     
106387
                           gb|AAO58243.1|
                           (AE016873) DNA polymerase III, delta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           345
                           75.65
                           86.95
                           0
                           1374.0
     

     
     
106391
                           emb|CAD16449.1|
                           (AL646071) PROBABLE DNA POLYMERASE III (DELTA SUBUNIT) PROTEIN [Ralstonia solanacearum]
                           364
                           42.03
                           56.04
                           25
                           612.0
     

     






      

          
GC ORFID: 45004How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3989Glimmer Score: 

          
Start: 3899256Stop: 3900293

          
Length: 1038


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3989 translation of PA3989Homolog Bit Score 676.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5734 (ORF: BLASTX 531.0), t_PA3989 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCTGACTCCCGCGCAACTCGCCAAGCACCTCCAGGGCCCCCTGGCGCCCGTCTATGTCGTCAGCGGC 
GATGAACCGCTGCTCTGCCAGGAAGCCTGCGATGCCATTCGCCAGGCCTGCCGCGAGCGCGACTTCGGCGAG 
CGCCAGGTATTCAATGCCGAAGCCAACTTCGATTGGGGCCTGCTGCTGGAGGCCGGCGCCAGCCTGTCGCTG 
TTCGCCGAGAAGCGCCTGATCGAACTGCGCCTGCCCTCCGGCAAGCCCGGCGACAAAGGCGCGGCAATTCTC 
CAGGAATACCTGCAACGGCCGCCGGAAGACACCGTGCTCCTGCTCAGCCTGCCCAAGCTCGATGGCAGCACG 
CAGAAGACCAAGTGGGCCAAGGCCCTGATCGATGGCAACGCCGCGCAGTTCATCCAGGTCTGGCCGGTCGAC 
GTCCACCAGTTGCCGCAGTGGATTCGCCAGCGCCTGTCCCAGGCCGGCCTGTCCGCCAGCCCCGAAGCCCTG 
GAGCTGATCGCCGCGCGCGTGGAAGGCAACCTGCTCGCCGCCGCCCAGGAAATCGAAAAGCTCAAGCTGCTC 
GCCGAGGGCAACCAGATCGACGCCGCCACCGTACAGGCCGCGGTCGCCGACAGCGCACGCTTCGATGTCTTC 
GGCCTGATCGACGCTGCCCTTGGCGGTGAAGCGGCCCACGCCCTGCGCATCCTGGAAGGACTGCGCGGCGAA 
GGCATCGAGCCGCCGGTGATCCTCTGGGGCCTGGCCCGCGAGATCCGCCTGCTGGCGGGTCTGTCCCAGCAA 
TACGGCCAGGGCATACCGCTGGAGAAAGCCTTCGCCCAGGCGCGTCCGCCGGTCTGGGACAAGCGCCGTCCG 
CTGCTGACCCGTGCCCTGCAACGCCACTCCAGCAGCCGCTGGAACCAGATGCTGCGGGATGCCCAGTTGATC 
GACGCGCAGATCAAGGGACAGGCACCCGGCAGCCCCTGGAGCGGTCTCTCGCTTCTCGCCCTGAGCCTCGCC 
GGCCAGCGTCTCGGCCTGCCGGCAGCCTGA