ViewGene

Locus Name:
GeneID:
Location:

GeneID:2001
TrivialName: PA14_15200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15200
PAO1 Ortholog Locus:PA3779
Sequence Length:1041
Protein Length:346
Start: 1288786
Stop: 1287746
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07166.1|AE004797_1 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 342/346 (98%), Positives = 344/346 (99%)
Sequence:
ATGCACACGAATCCGCGCCGCGGCCTCGCCCGCCGCTTCGCCGCCGGACTGCTGGCCGCCGCCCTGGGCCTG
GGCGGCAGCCTCGCCCAGGCCGCCACCACCCTCAACCTGAGCTATAACGGCGCCGCCGACAGCGAGAAGAAC
CTGGTGCACCTGTTCGCCAGCAACCTCAAGCGCCTGGCCGAGGAAAAGAGCGGCGGCGAGCTGCAGTTCAAG
CTCTACCCCAACAGCATGCTCGGCGAAGAGGAGCAGCGCATGGAACAGGTGATGACCGGCCCCGGCCTGAAC
ATCGCCTCGTTCGCCGGGATCGCCCCGCTGTTCCCGGAGATCTACGTCAGCGCCACGCCCTTCATGTTCAAG
GACGCCGCTGCGGCCCATGCCTTCTTCGATAGCGGCAGCTACTGGAAGGCCGCCCGCGAGGCCTTCCGCGAG
CGCACCGGCACCGAGCTGCTGGCGGTGGTCGAGGAAGGCGGCTTCCTCAACTTCACCAACGGCAAGAAGCCG
ATCCACGGCCCGGCGGACTTCCAGGGCCTGCGCTTCCGCGCCATGGATCCCAGCCAGGTGGCGCTCTACGAA
GCCTTCGGCGCCTCCGGCACGCCGATCCCCTGGACCGAGTTGTACATGGGCCTGCGCACCGGCGTCGCCGAC
GGCCAGATGAACCCGACCTCCTACATCATCCTCGGCAGCCTCTACCAGGTGCAGAAGTACCTGACCCTGGCC
AACATCCAGTACTCCGACCAGTTCCTGGTGGCCAACGGCGATCTGCTCGCCAGCCTCCCGGCGAAGGCGCGC
CAGGCCCTGCTCGACGCCGCCGCCGAAGCCACCCGGCTGAACCGCGAGGCGGTCGCCGCCCAGCAGGAGCAC
GACCTGGCGTTCCTCAAGGAAAAGGGCATGCAGATCATCCAGCCGTCCGCCGATGACCTCGCCGCCTTCCGC
GAGAAAGGCCAGCCGTCCTACCTGGCCTGGCTGAAGACCCAGGACATCGAGCCGCGCTGGACCGAGATGGCC
TTCCGCGACGCCGGTCTCGCCACCGCCCCCTGA
Translation:
MHTNPRRGLARRFAAGLLAAALGLGGSLAQAATTLNLSYNGAADSEKNLVHLFASNLKRLAEEKSGGELQFK
LYPNSMLGEEEQRMEQVMTGPGLNIASFAGIAPLFPEIYVSATPFMFKDAAAAHAFFDSGSYWKAAREAFRE
RTGTELLAVVEEGGFLNFTNGKKPIHGPADFQGLRFRAMDPSQVALYEAFGASGTPIPWTELYMGLRTGVAD
GQMNPTSYIILGSLYQVQKYLTLANIQYSDQFLVANGDLLASLPAKARQALLDAAAEATRLNREAVAAQQEH
DLAFLKEKGMQIIQPSADDLAAFREKGQPSYLAWLKTQDIEPRWTEMAFRDAGLATAP*
AnnotationID:2010GeneID:2001
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:26
Gene Name:
Confidence Code:3
GeneProduct:putative TRAP-type C4-dicarboxylate transport
Cell Localization:()
Synonyms:PA3779
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1638,pfam03480
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN82838.1|AE016768_256 (AE016768) Putative ABC transporter Periplasmic binding protein
           yiaO precursor [Escherichia coli CFT073]
          Length = 328

 Score =  141 bits (355), Expect = 7e-33
 Identities = 94/295 (31%), Positives = 149/295 (50%), Gaps = 12/295 (4%)

>gb|AAC76603.1| (AE000435) putative solute-binding transport protein [Escherichia
           coli K12]
          Length = 328

 Score =  137 bits (346), Expect = 7e-32
 Identities = 96/300 (32%), Positives = 154/300 (51%), Gaps = 22/300 (7%)

Structural Features:
COG1638, DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component 
[Carbohydrate transport and metabolism]
CD-Length = 332 residues,  98.2% aligned
Score =  253 bits (647), Expect = 6e-68
Identities = 113/332 (34%), Positives = 165/332 (49%), Gaps = 8/332 (2%)

pfam03480, SBP_bac_7, Bacterial extracellular solute-binding protein, family 7.
CD-Length = 287 residues,  98.3% aligned
Score =  238 bits (609), Expect = 2e-63
Identities = 102/285 (35%), Positives = 137/285 (48%), Gaps = 6/285 (2%)
Genomic Context:
Comment:
ReferenceID:4005
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21151
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31776
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2001_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2001

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3475 PA3779_tr translation of PA3779 346 98.84 99.42 0 1745.0
106384 gb|AAG07166.1|AE004797_1 (AE004797) hypothetical protein PA3779 [Pseudomonas aeruginosa PAO1] 346 98.84 99.42 0 1745.0
GC ORFID: 45003How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3779Glimmer Score:
Start: 3665151Stop: 3666191
Length: 1041
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3779 translation of PA3779Homolog Bit Score 676.0
Other Homologs: t_PA3779 (ORF: GLIMMER)
GC ORF Sequence
ATGCACACGAATCCGCGCCGCGGCCTCGCCCGCCGCTTCGCCGCCGGACTGCTGGCCGCCGCCCTGGGCCTG
GGCGGCAGCCTCGCCCAGGCCGCCACCACCCTCAACCTGAGCTATAACGGCGCCGCCGACAGCGAGAAGAAC
CTGGTGCACCTGTTCGCCAGCAACCTCAAGCGCCTGGCCGAGGAAAAGAGCGGCGGCGAGCTGCAGTTCAAG
CTCTACCCCAACAGCATGCTCGGCGAAGAGGAGCAGCGCATGGAACAGGTGATGACCGGCCCCGGCCTGAAC
ATCGCCTCGTTCGCCGGGATCGCCCCGCTGTTCCCGGAGATCTACGTCAGCGCCACGCCCTTCATGTTCAAG
GACGCCGCTGCGGCCCATGCCTTCTTCGATAGCGGCAGCTACTGGAAGGCCGCCCGCGAGGCCTTCCGCGAG
CGCACCGGCACCGAGCTGCTGGCGGTGGTCGAGGAAGGCGGCTTCCTCAACTTCACCAACGGCAAGAAGCCG
ATCCACGGCCCGGCGGACTTCCAGGGCCTGCGCTTCCGCGCCATGGATCCCAGCCAGGTGGCGCTCTACGAA
GCCTTCGGCGCCTCCGGCACGCCGATCCCCTGGACCGAGTTGTACATGGGCCTGCGCACCGGCGTCGCCGAC
GGCCAGATGAACCCGACCTCCTACATCATCCTCGGCAGCCTCTACCAGGTGCAGAAGTACCTGACCCTGGCC
AACATCCAGTACTCCGACCAGTTCCTGGTGGCCAACGGCGATCTGCTCGCCAGCCTCCCGGCGAAGGCGCGC
CAGGCCCTGCTCGACGCCGCCGCCGAAGCCACCCGGCTGAACCGCGAGGCGGTCGCCGCCCAGCAGGAGCAC
GACCTGGCGTTCCTCAAGGAAAAGGGCATGCAGATCATCCAGCCGTCCGCCGATGACCTCGCCGCCTTCCGC
GAGAAAGGCCAGCCGTCCTACCTGGCCTGGCTGAAGACCCAGGACATCGAGCCGCGCTGGACCGAGATGGCC
TTCCGCGACGCCGGTCTCGCCACCGCCCCCTGA