ViewGene
Locus Name:
GeneID:
Location:

GeneID:2000
TrivialName: PA14_27250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27250
PAO1 Ortholog Locus:PA2848
Sequence Length:1020
Protein Length:339
Start: 2367090
Stop: 2366071
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06236.1|AE004711_8 (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 336/339 (99%), Positives = 338/339 (99%)
Sequence:
GTGGCTGGATGGGAAACGCACAAGAAAGCACAATGGCTATGCCAATCACGCAAAGGCATGAGCATGTTGCCC
GATACCCTCAGCGAACAGTTCGTTCTCTACCTCGATGTCCTCGATGGCGGCAGCTTCTCCGCCGCTGCCCGC
AAGCACCCGCTCACCCCGTCCGCCGTAGCGCGCCGGATGGACGCCCTGGAGCGCGCCGTCGGCAGCACCCTG
CTGGTGCGCACCACCCATGCGGTCCGCGCCACGCCGGCCGGCCTGGCCTTCGCCGACCGCGCCCGGCGGATC
GTCACCGAACTGCGCCTGGCCCGCGCCGAAGCGGTGTCCCTGAGCACCGCGCCGCAGGGCCTGATCCGTATC
GATGCGCCGGTGCCCTTCGGCCGCCGCCACCTGGCCCCGGCGATCGCCGACTTCCTCAAGGCCAACCCCGGG
CTGGACGTGCAATTGCGCCTGATCGGCAGCTTCATCGACCTGCAGGGCGAACATCTCGGCGAGGTCGACCTG
GTGTTGCGCGCCGGCCCGCTGCCCGACAGCCGCCTGGTGGCCACTTCGCTGGCGCCGATGGTGCGGGTCGTC
TGCGCCAGCCCGGAGTACCTGCGCGAACATGGCGTTCCCGCATCCCCCGGCGAACTGCCGGAGCATGCCGGC
ATCGATTGGGACAACCTGTCGCCACCCTATGCCTGGCGCTTCCAGCACGACGGCAAGCTCCAGCACCTGCGG
CCGAAACGGGCGCGGCTGGCCACCAATAACGCCGAAGCGATGGTCGACGCGGCGCTGGCCGGCCTCGGCATC
GCCCACCTGCCGACCTGGCTGTGCAGCGAGTACTTGCTGCGCGGCGAACTGCAGGCGCTGTTCTGCGACGAG
GGCTTGCCCGCCGCCGAGCCCACCTGCATCTATGCCCTGCGCCTGGAACGCGAAGCCAGTTCGCGAACCCGC
CTGCTGCTGGCTTTcCTCCGCGAGCGCTTCGGCTTTCCGCCACCCTGGGACCAAGCCCTGCAGCAGCGTCTC
GGCGAGCGCTGA
Translation:
MAGWETHKKAQWLCQSRKGMSMLPDTLSEQFVLYLDVLDGGSFSAAARKHPLTPSAVARRMDALERAVGSTL
LVRTTHAVRATPAGLAFADRARRIVTELRLARAEAVSLSTAPQGLIRIDAPVPFGRRHLAPAIADFLKANPG
LDVQLRLIGSFIDLQGEHLGEVDLVLRAGPLPDSRLVATSLAPMVRVVCASPEYLREHGVPASPGELPEHAG
IDWDNLSPPYAWRFQHDGKLQHLRPKRARLATNNAEAMVDAALAGLGIAHLPTWLCSEYLLRGELQALFCDE
GLPAAEPTCIYALRLEREASSRTRLLLAFLRERFGFPPPWDQALQQRLGER*
AnnotationID:2009GeneID:2000
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2848
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67480.1|AE016374_12 (AE016780) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 317

 Score =  443 bits (1140), Expect = e-124
 Identities = 226/315 (71%), Positives = 253/315 (80%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  96.0% aligned
Score =  122 bits (306), Expect = 6e-29
Identities = 102/305 (33%), Positives = 133/305 (43%), Gaps = 16/305 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36180




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2000_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2000
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3474
                           PA2848_tr
                           translation of PA2848
                           339
                           99.11
                           99.70
                           0
                           1744.0
     

     
     
106382
                           gb|AAG06236.1|AE004711_8
                           (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           339
                           98.82
                           99.70
                           0
                           1741.0
     

     
     
106383
                           gb|AAN67480.1|AE016374_12
                           (AE016780) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           339
                           66.66
                           74.92
                           22
                           1140.0
     

     






      

          
GC ORFID: 45002How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2848Glimmer Score: 

          
Start: 2586837Stop: 2587856

          
Length: 1020


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2848 translation of PA2848Homolog Bit Score 676.0

          
Other Homologs:  t_PA2848 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCTGGATGGGAAACGCACAAGAAAGCACAATGGCTATGCCAATCACGCAAAGGCATGAGCATGTTGCCC 
GATACCCTCAGCGAACAGTTCGTTCTCTACCTCGATGTCCTCGATGGCGGCAGCTTCTCCGCCGCTGCCCGC 
AAGCACCCGCTCACCCCGTCCGCCGTAGCGCGCCGGATGGACGCCCTGGAGCGCGCCGTCGGCAGCACCCTG 
CTGGTGCGCACCACCCATGCGGTCCGCGCCACGCCGGCCGGCCTGGCCTTCGCCGACCGCGCCCGGCGGATC 
GTCACCGAACTGCGCCTGGCCCGCGCCGAAGCGGTGTCCCTGAGCACCGCGCCGCAGGGCCTGATCCGTATC 
GATGCGCCGGTGCCCTTCGGCCGCCGCCACCTGGCCCCGGCGATCGCCGACTTCCTCAAGGCCAACCCCGGG 
CTGGACGTGCAATTGCGCCTGATCGGCAGCTTCATCGACCTGCAGGGCGAACATCTCGGCGAGGTCGACCTG 
GTGTTGCGCGCCGGCCCGCTGCCCGACAGCCGCCTGGTGGCCACTTCGCTGGCGCCGATGGTGCGGGTCGTC 
TGCGCCAGCCCGGAGTACCTGCGCGAACATGGCGTTCCCGCATCCCCCGGCGAACTGCCGGAGCATGCCGGC 
ATCGATTGGGACAACCTGTCGCCACCCTATGCCTGGCGCTTCCAGCACGACGGCAAGCTCCAGCACCTGCGG 
CCGAAACGGGCGCGGCTGGCCACCAATAACGCCGAAGCGATGGTCGACGCGGCGCTGGCCGGCCTCGGCATC 
GCCCACCTGCCGACCTGGCTGTGCAGCGAGTACTTGCTGCGCGGCGAACTGCAGGCGCTGTTCTGCGACGAG 
GGCTTGCCCGCCGCCGAGCCCACCTGCATCTATGCCCTGCGCCTGGAACGCGAAGCCAGTTCGCGAACCCGC 
CTGCTGCTGGCTTTcCTCCGCGAGCGCTTCGGCTTTCCGCCACCCTGGGACCAAGCCCTGCAGCAGCGTCTC 
GGCGAGCGCTGA