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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07658.1|AE004842_7 (AE004842) DNA-directed RNA polymerase beta chain [Pseudomonas aeruginosa PAO1]
Identities = 1355/1357 (99%), Positives = 1356/1357 (99%)
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Sequence:
ATGGCTTACTCATACACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGACGTCATGGATGTG
CCGTATTTGCTGGCCATCCAGCTGGATTCCTATCGCGAATTCCTGCAGGCTGGCGCAACCAAGGAGCAGTTC
CGCGATATCGGTCTGCACGCGGCCTTCAAGTCCGTTTTCCCGATTATCAGCTATTCCGGCAATGCTGCCCTG
GAATACGTCGGCTACCGTCTGGGTGAGCCGGCATTCGATGTCAAGGAGTGCGTGCTGCGCGGCGTGACCTTC
GCCGTACCGCTGCGCGTGAAAGTTCGCCTGATCATCTTCGACCGCGAGTCGTCGAACAAGGCGATCAAGGAC
ATCAAGGAACAAGAAGTCTACATGGGGGAAATCCCCCTGATGACCGAGAACGGTACCTTCATCATCAACGGT
ACCGAGCGTGTCATCGTCTCCCAGCTGCACCGTTCCCCGGGCGTGTTCTTCGACCACGACCGTGGCAAGACC
CACAGCTCCGGCAAGCTGCTGTACTCCGCGCGGATCATTCCTTACCGCGGTTCCTGGCTGGACTTCGAGTTC
GATCCGAAGGACTGCGTGTTCGTCCGTATCGACCGTCGCCGCAAGCTGCCGGCCTCGGTACTGCTGCGCGCG
CTCGGCTACAGCACCGAAGAGATCCTCAACGCCTTCTACGCGACCAACGTCTTCCACATCAAGGGCGAGACC
CTGAACCTGGAACTGGTCCCGCAGCGTCTGCGCGGTGAAGTCGCGAGCATCGACATCAAGGATGGCAGCGGC
AAGGTGATCGTGGAGCAGGGGCGTCGTATCACTGCCCGCCACATCAACCAGCTGGAAAAGGCTGGCGTGAGC
CAGCTGGAAGTGCCGTTCGACTACCTGATCGGCCGTACCATCGCCAAGGCGATCGTGCATCCGGCTACCGGC
GAGATCATCGCCGAGTGCAACACCGAGCTGACCCTCGACCTCCTGGCCAAGGTGGCCAAGGCCCAGGTCGTG
CGCATCGAGACTCTGTACACCAACGACATCGACTGCGGTCCGTTCATCTCCGACACCCTGAAGATCGACAAC
ACCAGCAACCAGCTGGAAGCCCTGGTCGAAATCTACCGGATGATGCGTCCGGGCGAGCCGCCGACCAAGGAA
GCTGCCGAGACCCTGTTCGGCAACCTGTTCTTCAGCGCCGAGCGTTACGACCTGTCGGCCGTGGGCCGGATG
AAGTTCAACCGCCGTATCGGTCGTACCGAGATCGAAGGTCCGGGCGTCCTGAGCAAGGAAGACATCATCGAT
GTGCTCAAGACCCTCGTCGACATCCGTAACGGCAAGGGCATCGTCGATGACATCGACCACCTGGGCAACCGT
CGCGTCCGTTGCGTCGGCGAAATGGCCGAGAACCAGTTCCGCGTGGGCCTGGTGCGCGTCGAGCGCGCGGTC
AAGGAACGCCTGTCCATGGCCGAAAGCGAAGGCCTGATGCCGCAGGACCTGATCAACGCCAAGCCGGTGGCT
GCCGCGATCAAGGAGTTCTTCGGTTCGAGCCAGCTGTCGCAGTTCATGGGCCAGAACAACCCGCTTTCCGAG
ATCACCCACAAGCGCCGCGTCTCCGCGCTCGGCCCGGGCGGTCTGACCCGTGAGCGTGCGGGCTTCGAGGTT
CGTGACGTACACCCGACCCACTACGGCCGCGTGTGCCCGATCGAAACCCCTGAAGGTCCGAACATCGGTCTG
ATCAACTCCCTGGCGACCTACGCCCGCACCAACAAGTACGGCTTCCTCGAGAGCCCGTACCGCGTAGTCAAG
GACAGCCTGGTAACCGACGAGATCGTGTTCCTGTCGGCGATCGAAGAAGCCGACCACGTCATTGCCCAGGCT
TCGGCGACCCTCAACGAGAAGGGTCAACTGGTGGACGAACTGGTGGCCGTGCGTCACCTGAACGAATTCACC
GTGAAGGCGCCGGAAGACGTGACCCTGATGGACGTGTCGCCGAAGCAGGTCGTTTCCGTAGCTGCCTCGCTG
ATTCCGTTCCTCGAGCACGATGACGCCAACCGCGCACTCATGGGCTCGAACATGCAGCGTCAGGCCGTGCCG
ACCCTGCGTGCCGACAAGCCGCTGGTGGGTACCGGCATGGAGCGCAACGTGGCGCGCGACTCCGGCGTCTGC
GTCGTGGCTCGCCGTGGTGGTGTGATCGACTCGGTCGATGCCAGCCGTGTCGTGGTTCGCGTGGCGGATGAC
GAGGTCGAGACCGGCGAAGCGGGTGTCGACATCTACAACCTGACCAAGTACACCCGTTCCAACCAGAACACC
TGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACGTGGTTGCGCGCGGCGACATCCTGGCCGACGGTCCG
TCCACCGACATGGGCGAACTGGCCCTGGGCCAGAACATGCGCGTAGCGTTCATGCCCTGGAACGGCTTCAAC
TTCGAAGACTCCATCTGCCTGTCCGAGCGCGTGGTCCAGGAAGATCGTTTCACCACGATCCACATCCAGGAA
CTGACCTGCGTCGCTCGTGACACCAAGCTCGGCCCAGAGGAAATCACCGCGGACATCCCGAACGTGGGCGAG
GCCGCGCTGAACAAGCTGGACGAAGCCGGTATCGTCTACGTCGGCGCCGAAGTGCAGGCCGGCGACATCCTG
GTCGGCAAGGTCACTCCGAAAGGCGAGACCCAGCTGACTCCGGAAGAGAAGCTGCTGCGCGCGATCTTCGGT
GAGAAGGCGTCCGACGTGAAGGACACCTCCCTGCGTGTGCCGACCGGCACCAAGGGTACCGTCATCGACGTT
CAGGTCTTCACCCGCGACGGCGTCGAGCGCGACTCCCGCGCTCTGTCCATCGAGAAGATGCAACTCGACCAG
ATCCGCAAGGACCTGAACGAAGAGTTCCGCATCGTCGAAGGCGCGACCTTCGAGCGTCTGCGTGCCGCCCTG
GTCGGTGCCAAGGCTGAAGGTGGCCCGGCGCTGAAGAAGGGTACGGAGATCACCGACGACTACCTCGACGGC
CTCGAGCGCGGCCAGTGGTTCAAGCTGCGCATGGCCGACGACGCCCTGAACGAACAGCTGGAGAAGGCCCAG
GCCTACATCAGCGATCGTCGCCAGCTCCTGGACGACAAGTTCGAGGACAAGAAGCGCAAGCTGCAGCAGGGC
GACGACTTGGCTCCGGGCGTGCTGAAGATCGTCAAGGTCTACCTGGCGATCAAGCGTCGCATCCAGCCGGGC
GACAAGATGGCCGGCCGTCACGGTAACAAGGGTGTGGTCTCGGTGATCATGCCGGTGGAAGACATGCCGCAC
GATGCCAACGGCACCCCGGTCGACATCGTCCTCAACCCGTTGGGCGTACCGTCGCGTATGAACGTCGGCCAG
ATCCTCGAAACCCACCTGGGCCTCGCGGCCAAGGGGCTGGGCGAGAAGATCAACCGCATGCTCGAAGAGCAG
CGCAAGGTCGCCGAACTGCGTAAGTTCCTGCACGAGATCTACAACGAGATCGGCGGTCGCGAGGAAAACCTC
GACGAGCTGGGCGACAACGAGATCCTCGCGCTGGCCAAGAACCTGCGCGGTGGCGTACCGATGGCGACCCCG
GTGTTCGATGGCGCCAAGGAACGCGAGATCAAGGCCATGCTGAAGCTGGCCGACCTGCCGGAAAGCGGCCAG
ATGCGTCTGTTCGACGGCCGTACCGGCAACCAGTTCGAGCGTCCGACCACCGTCGGCTACATGTACATGCTC
AAGCTGAACCACCTGGTGGACGACAAGATGCACGCCCGTTCCACCGGCTCGTACAGCCTGGTTACCCAGCAG
CCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAGGTGTGGGCGCTGGAAGCCTAT
GGCGCGGCGTACACCCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGAACGGCCGGACCAAGATGTAC
AAGAACATCGTGGACGGCGATCACCGCATGGAGGCCGGCATGCCCGAGTCCTTCAACGTTCTGATCAAAGAG
ATCCGTTCGCTCGGCATCGACATCGAACTGGAAACCGAATAA |
Translation:
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDIGLHAAFKSVFPIISYSGNAAL
EYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKDIKEQEVYMGEIPLMTENGTFIING
TERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRA
LGYSTEEILNAFYATNVFHIKGETLNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVS
QLEVPFDYLIGRTIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDN
TSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDLSAVGRMKFNRRIGRTEIEGPGVLSKEDIID
VLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVA
AAIKEFFGSSQLSQFMGQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL
INSLATYARTNKYGFLESPYRVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFT
VKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDVVARGDILADGP
STDMGELALGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGE
AALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDV
QVFTRDGVERDSRALSIEKMQLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDG
LERGQWFKLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQ
RKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATPVFDGAKEREIKAMLKLADLPESGQ
MRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE* |
AnnotationID:30 | GeneID:20 |
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Modification Date/Time: |
2005-04-03 17:05:28 |
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GeneProduct: | DNA-directed RNA polymerase beta chain |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (26) Translation, post-translational modification, degradation |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | translation, ribosomal structure and biogenesis |
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Homology: | >gb|AAN66077.1|AE016237_1 (AE016775) DNA-directed RNA polymerase, beta subunit [Pseudomonas
putida KT2440]
Length = 1357
Score = 2504 bits (6490), Expect = 0.0
Identities = 1264/1357 (93%), Positives = 1310/1357 (96%)
>gb|AAO54161.1| (AE016858) DNA-directed RNA polymerase, beta subunit [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 1357
Score = 2500 bits (6480), Expect = 0.0
Identities = 1260/1357 (92%), Positives = 1310/1357 (96%)
>gb|AAP18712.1| (AE016990) RNA polymerase, beta subunit [Shigella flexneri 2a str.
2457T]
Length = 1342
Score = 1984 bits (5140), Expect = 0.0
Identities = 992/1360 (72%), Positives = 1161/1360 (85%), Gaps = 21/1360 (1%) |
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Structural Features: | COG0085, RpoB, DNA-directed RNA polymerase,
beta subunit/140 kD subunit [Transcription]
CD-Length = 1060 residues, only 66.2% aligned
Score = 762 bits (1968), Expect = 0.0
Identities = 390/715 (54%), Positives = 470/715 (65%), Gaps = 43/715 (6%)
pfam04560, RNA_pol_Rpb2_7, RNA polymerase Rpb2, domain 7
CD-Length = 82 residues, 100.0% aligned
Score = 121 bits (306), Expect = 5e-28
Identities = 49/82 (59%), Positives = 58/82 (70%), Gaps = 5/82 (6%) |
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ReferenceID:36772 |
Author/Investigator(s): |
Ovchinnikov YA, Monastyrskaya GS, Gubanov VV, Guryev SO, Chertov OYu, Modyanov NN, Grinkevich VA, Makarova IA, Marchenko TV, Polovnikova IN, Lipkin VM, Sverdlov ED. |
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Title: |
The primary structure of Escherichia coli RNA polymerase. Nucleotide sequence of the rpoB gene and amino-acid sequence of the beta-subunit. |
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Source: | Eur J Biochem. 1981 Jun 1;116(3):621-9. |
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