ViewGene
Locus Name:
GeneID:
Location:

GeneID:1999
TrivialName: PA14_37850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37850
PAO1 Ortholog Locus:PA2060
Sequence Length:1017
Protein Length:338
Start: 3377496
Stop: 3376480
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05448.1|AE004632_7 (AE004632) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 336/337 (99%), Positives = 336/337 (99%)
Sequence:
ATGGCCATCGTCCTTTCCCCGCTGCACCGCCGCCGCCTCGCCGCGTTCCGCGCCAACCGCCGCGGGCGCCTG
GCGCTGCGGCTGTTCCTCGCGCTGTTCGTCGCCTGCCTGTTCGCCGAGCTGATCGCCAACGACCGCCCGCTG
CTGCTGGAATACCGTGGGCAGTGGTTCCTGCCGGTGCTGCGGGACTATCCGGAAACCGCCTTCGGCGGCGAG
CTGCCGTTCCCGCCGGACTACCGCGGTCGCTTCATGAGCGAACGCATCGCCCGCGACGGCTGGGCGCTGTGG
CCGCCGATCCGCTTCGACGCCCGCAGCATCAACTACGCGCGCCCGGCGCCGGCGCCGCCCTCGGCGGAGAAC
TGGCTGGGCACCGACGACCAGGGCCGCGACGTGCTCGCGCGGGTGATCTACGGCCTGCGCCTGTCGATCCTC
TTCGCCCTCGGCCTGACCCTGGCCTCGTCGTTGCTGGGAATCTGCGCCGGCGCGGTGCAGGGCTACTACGGC
GGCTGGATCGACCTGTTCGGCCAGCGCTTCATCGAGGTCTGGTCGGGTCTGCCGATGCTTTACCTGCTGATC
ATCCTCGCCAGCCTGGTGCAGCCCGGGGTCGGCTGGCTGCTGGCGATCATGCTGCTGTTCTCCTGGACCAGC
CTGGTCGACGTGGTTCGCGCCGAGTTCCTTCGCGGTCGTCACCTGGAGTACGTCAAGGCGGCGCGGACCCTC
GGCCTCGGCGACGCCGGGGTGATGTTCCGGCACATCCTGCCCAACGCCATGGTTGCGACCCTGACCTTCCTG
CCGTTCCTGCTCTGTGGCGCGGTGACCACCCTGACCGCCCTGGACTTCCTCGGTTTCGGCCTGCCGCCCGGC
TCGCCGAGCCTTGGCGAACTGGTCGGGCAGGGCCGTGACAACCTCCAGGCGCCCTGGCTCGGGCTGACCGTG
TTCGTGGTCCTGGCGACCTTGCTCAGCCTGCTGGTGTTCATCGGCGAAGCGGTGCGCGACGCCTTCGATCCG
AGGAAATGA
Translation:
MAIVLSPLHRRRLAAFRANRRGRLALRLFLALFVACLFAELIANDRPLLLEYRGQWFLPVLRDYPETAFGGE
LPFPPDYRGRFMSERIARDGWALWPPIRFDARSINYARPAPAPPSAENWLGTDDQGRDVLARVIYGLRLSIL
FALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFIEVWSGLPMLYLLIILASLVQPGVGWLLAIMLLFSWTS
LVDVVRAEFLRGRHLEYVKAARTLGLGDAGVMFRHILPNAMVATLTFLPFLLCGAVTTLTALDFLGFGLPPG
SPSLGELVGQGRDNLQAPWLGLTVFVVLATLLSLLVFIGEAVRDAFDPRK*
AnnotationID:2008GeneID:1999
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:52
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:yejE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57188.1| (AE016869) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 339

 Score =  478 bits (1229), Expect = e-134
 Identities = 236/337 (70%), Positives = 273/337 (81%), Gaps = 3/337 (0%)

>gb|AAN68684.1|AE016497_9 (AE016785) ABC transporter, permease protein, putative [Pseudomonas
           putida KT2440]
          Length = 338

 Score =  444 bits (1143), Expect = e-124
 Identities = 220/338 (65%), Positives = 267/338 (78%), Gaps = 3/338 (0%)

>gb|AAN81170.1|AE016763_129 (AE016763) Hypothetical ABC transporter permease protein yejE
           [Escherichia coli CFT073]
          Length = 341

 Score =  439 bits (1128), Expect = e-122
 Identities = 209/336 (62%), Positives = 269/336 (80%), Gaps = 2/336 (0%)






 
Structural Features:
COG4239, COG4239, ABC-type uncharacterized transport system, permease component 
CD-Length = 341 residues,  99.4% aligned
Score =  509 bits (1311), Expect = 3e-145
Identities = 237/339 (69%), Positives = 281/339 (82%), Gaps = 2/339 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4001




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32645




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1999_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1999
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3472
                           PA2060_tr
                           translation of PA2060
                           338
                           99.40
                           99.40
                           0
                           1743.0
     

     
     
106345
                           gb|AAG05448.1|AE004632_7
                           (AE004632) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           338
                           99.40
                           99.40
                           0
                           1743.0
     

     
     
3473
                           PA1808_tr
                           translation of PA1808
                           341
                           69.20
                           82.69
                           5
                           1255.0
     

     
     
106346
                           gb|AAG05197.1|AE004607_3
                           (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           341
                           69.20
                           82.69
                           5
                           1255.0
     

     
     
106347
                           gb|AAO57188.1|
                           (AE016869) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           69.20
                           80.35
                           5
                           1232.0
     

     






      

          
GC ORFID: 45001How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2060Glimmer Score: 

          
Start: 1576417Stop: 1577433

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2060 translation of PA2060Homolog Bit Score 676.0

          
Other Homologs:  t_PA1808 (ORF: BLASTX 487.0), psyr_15may02_Scaffold1_revised_gene637 (ORF: BLASTX 476.0), psyr_15may02_Scaffold5_revised_gene6045 (ORF: BLASTX 457.0), psyr_15may02_Scaffold2_revised_gene3082 (ORF: BLASTX 441.0), t_PA2060 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATCGTCCTTTCCCCGCTGCACCGCCGCCGCCTCGCCGCGTTCCGCGCCAACCGCCGCGGGCGCCTG 
GCGCTGCGGCTGTTCCTCGCGCTGTTCGTCGCCTGCCTGTTCGCCGAGCTGATCGCCAACGACCGCCCGCTG 
CTGCTGGAATACCGTGGGCAGTGGTTCCTGCCGGTGCTGCGGGACTATCCGGAAACCGCCTTCGGCGGCGAG 
CTGCCGTTCCCGCCGGACTACCGCGGTCGCTTCATGAGCGAACGCATCGCCCGCGACGGCTGGGCGCTGTGG 
CCGCCGATCCGCTTCGACGCCCGCAGCATCAACTACGCGCGCCCGGCGCCGGCGCCGCCCTCGGCGGAGAAC 
TGGCTGGGCACCGACGACCAGGGCCGCGACGTGCTCGCGCGGGTGATCTACGGCCTGCGCCTGTCGATCCTC 
TTCGCCCTCGGCCTGACCCTGGCCTCGTCGTTGCTGGGAATCTGCGCCGGCGCGGTGCAGGGCTACTACGGC 
GGCTGGATCGACCTGTTCGGCCAGCGCTTCATCGAGGTCTGGTCGGGTCTGCCGATGCTTTACCTGCTGATC 
ATCCTCGCCAGCCTGGTGCAGCCCGGGGTCGGCTGGCTGCTGGCGATCATGCTGCTGTTCTCCTGGACCAGC 
CTGGTCGACGTGGTTCGCGCCGAGTTCCTTCGCGGTCGTCACCTGGAGTACGTCAAGGCGGCGCGGACCCTC 
GGCCTCGGCGACGCCGGGGTGATGTTCCGGCACATCCTGCCCAACGCCATGGTTGCGACCCTGACCTTCCTG 
CCGTTCCTGCTCTGTGGCGCGGTGACCACCCTGACCGCCCTGGACTTCCTCGGTTTCGGCCTGCCGCCCGGC 
TCGCCGAGCCTTGGCGAACTGGTCGGGCAGGGCCGTGACAACCTCCAGGCGCCCTGGCTCGGGCTGACCGTG 
TTCGTGGTCCTGGCGACCTTGCTCAGCCTGCTGGTGTTCATCGGCGAAGCGGTGCGCGACGCCTTCGATCCG 
AGGAAATGA