ViewGene
Locus Name:
GeneID:
Location:

GeneID:1998
TrivialName: PA14_49150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49150
PAO1 Ortholog Locus:PA1182
Sequence Length:1002
Protein Length:333
Start: 4364836
Stop: 4365837
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04571.1|AE004548_5 (AE004548) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 332/333 (99%), Positives = 333/333 (100%)
Sequence:
ATGCGTGAGCGCACCATCGCCAGCCATTTCGTCCGCGCCGCGTTGCGCGGGGCCACGCGCCAAGGCCTGGAC
GGCCCCGCCCTGTTGCGTCGCGCCGGCATCCAGCCGGCCCTGCTGGACGAACCGCGGGCACGCATCGCGCCG
GAGCAGTTCACCCGTCTGATGCAGTTGCTCTGGGAAGTGCTGGACGACGAATACATGGGCTTCGGCGAAGTC
CGCAGCAAGCGCGGCACCTTCGCCATGATGTGCCACACCCTGATTCATTGCCGGACCCTGGAAAAGGCCCTG
CAGCGCGGCGAACTGTTCTACGGCCTGTTCCCCCAGGCGCCGCTGATCCACCTGCGGCGCGAAGGCGACCTG
GTGCGCCTGAGCCTCGAGGAACGCCACCTGTCGGACCCGGATCACTTTCTCGCCGAAAGCCTGCTGGTGATC
TGGCACCGCCTCGCCAGTTGGCTGATCGGCCAGCGCATCCGCCTGGAGGAAGCCACCTTCAGCTACCCGGCG
CCGGACCACCAGGCCGAGTACGACCTGCTGTTTCCCTGCCCCCGGCGGTTTTCCGCCGGCTGCACCAGCCTG
CTGTTCGCCGCCCGCTACCTGGGGATGCCGCTGCTGCAGGACGAACGCACCCTCAAGCAGTTCCTCCAGCAC
TCTCCCGCCGACCTGCTGGCGCGCCCGGACGGCGGCGACAGCCTGACCAGCCAGATCCGCCGCCTGCTCGGC
CGCGACTGCCGGCGCTGGCCGGACCTCGACCAGGTCGCCCGCCAGCTGCACATGAGTTCGCAGACCCTGCGA
CGCCACCTGCGCGAGGAAGGCGGCAGCTTCCAGCAACTCAAGGACCACCTGCGCCGCGACCTGGCGATCTAC
CACCTGGGTCGGGACGAGCTATCGATCCAGGACATCGCCGAGCAGCTCGGCTTTTCCGAGCCCTCGGCCTTC
CATCGCGCGTTCAAGAAGTGGACCGGCCTCACCCCCGGCGCGTACCGGCACCAGGCGGAAGCCTGA
Translation:
MRERTIASHFVRAALRGATRQGLDGPALLRRAGIQPALLDEPRARIAPEQFTRLMQLLWEVLDDEYMGFGEV
RSKRGTFAMMCHTLIHCRTLEKALQRGELFYGLFPQAPLIHLRREGDLVRLSLEERHLSDPDHFLAESLLVI
WHRLASWLIGQRIRLEEATFSYPAPDHQAEYDLLFPCPRRFSAGCTSLLFAARYLGMPLLQDERTLKQFLQH
SPADLLARPDGGDSLTSQIRRLLGRDCRRWPDLDQVARQLHMSSQTLRRHLREEGGSFQQLKDHLRRDLAIY
HLGRDELSIQDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRHQAEA*
AnnotationID:2007GeneID:1998
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:55
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3999




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16974




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1182_CDS.cgi


    		




 
URL:

















    ReferenceID:21145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1998
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3470
                           PA1182_tr
                           translation of PA1182
                           333
                           99.69
                           99.99
                           0
                           1745.0
     

     
     
106343
                           gb|AAG04571.1|AE004548_5
                           (AE004548) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           333
                           99.69
                           99.99
                           0
                           1745.0
     

     
     
3471
                           PA2556_tr
                           translation of PA2556
                           374
                           37.16
                           50.80
                           54
                           532.0
     

     
     
106344
                           gb|AAG05944.1|AE004683_8
                           (AE004683) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           374
                           37.16
                           50.80
                           54
                           532.0
     

     






      

          
GC ORFID: 45000How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1182Glimmer Score: 

          
Start: 589072Stop: 588071

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1182 translation of PA1182Homolog Bit Score 676.0

          
Other Homologs:  t_PA1182 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGAGCGCACCATCGCCAGCCATTTCGTCCGCGCCGCGTTGCGCGGGGCCACGCGCCAAGGCCTGGAC 
GGCCCCGCCCTGTTGCGTCGCGCCGGCATCCAGCCGGCCCTGCTGGACGAACCGCGGGCACGCATCGCGCCG 
GAGCAGTTCACCCGTCTGATGCAGTTGCTCTGGGAAGTGCTGGACGACGAATACATGGGCTTCGGCGAAGTC 
CGCAGCAAGCGCGGCACCTTCGCCATGATGTGCCACACCCTGATTCATTGCCGGACCCTGGAAAAGGCCCTG 
CAGCGCGGCGAACTGTTCTACGGCCTGTTCCCCCAGGCGCCGCTGATCCACCTGCGGCGCGAAGGCGACCTG 
GTGCGCCTGAGCCTCGAGGAACGCCACCTGTCGGACCCGGATCACTTTCTCGCCGAAAGCCTGCTGGTGATC 
TGGCACCGCCTCGCCAGTTGGCTGATCGGCCAGCGCATCCGCCTGGAGGAAGCCACCTTCAGCTACCCGGCG 
CCGGACCACCAGGCCGAGTACGACCTGCTGTTTCCCTGCCCCCGGCGGTTTTCCGCCGGCTGCACCAGCCTG 
CTGTTCGCCGCCCGCTACCTGGGGATGCCGCTGCTGCAGGACGAACGCACCCTCAAGCAGTTCCTCCAGCAC 
TCTCCCGCCGACCTGCTGGCGCGCCCGGACGGCGGCGACAGCCTGACCAGCCAGATCCGCCGCCTGCTCGGC 
CGCGACTGCCGGCGCTGGCCGGACCTCGACCAGGTCGCCCGCCAGCTGCACATGAGTTCGCAGACCCTGCGA 
CGCCACCTGCGCGAGGAAGGCGGCAGCTTCCAGCAACTCAAGGACCACCTGCGCCGCGACCTGGCGATCTAC 
CACCTGGGTCGGGACGAGCTATCGATCCAGGACATCGCCGAGCAGCTCGGCTTTTCCGAGCCCTCGGCCTTC 
CATCGCGCGTTCAAGAAGTGGACCGGCCTCACCCCCGGCGCGTACCGGCACCAGGCGGAAGCCTGA