ViewGene

Locus Name:
GeneID:
Location:

GeneID:1997
TrivialName: PA14_59630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59630
PAO1 Ortholog Locus:
Sequence Length:1032
Protein Length:343
Start: 5306710
Stop: 5305679
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84179.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 343/343 (100%), Positives = 343/343 (100%)
Sequence:
ATGGCCGAAGCTATCAGAAAGGATGCAATGATGACAAAACTCTACTTTGATCTTCTGAACTCGCCTGCCGAG
GCTCATTCGTCGATACAAAAGTCTTTATCTGTGCAGGCAATCTCCACAACTGTCCCAATACTGGAGTTTCCT
TCGGAAACCGTATACGCCTATGCATCGTACATAAATGCATTAAGTATCGGTCAACGCATAGATCCTGCATTC
ACCCAGAGCTTAACGAGTGCCATATCCAACCTGGCAGGTCGCCCGATTGCAGTAAGCGACATTTACCAAAAA
ATTCATGAAACCACACTGAGAACACCTGTTGAGATGGGCGTTCGTCCTAATAGCATCACCTTTGAGGAGTAT
CAGGCCACCATAAATCAGCAAGCCATCAACATGGTTCAAGATATGCAGGATGGAGACAAAGGTGAGAAGGTG
GAGGCCCTCCAGGCCAATATGCAGTTCCTGTATGGACAGGAGATAAATACTGATTTCATCGCTCGTAATGAA
CTCGCTGCTGGGCAGAGAGCGAAAACCGTCGCAATAGTTCAGGGGCATATCACCATCGGGTACGGCTTCGAT
ACCTTCGTGCATGAAGCGTCCGAGCTAAACTCTTTGAATCTTGTTGGTTCTACGCGACAGAAGGTATTACCT
GCATTGCAGCTATCAACGTCCGACCCAGGCTTCTGGAGCGTCTATGCCTTGCTGGGACAAAGTCTCACGGAT
GACGATGGGCTATTACTCTTTAGTGCCAAAGCGCGAGCTGTTGTTCAACGCATAGCAAGCAACCAGTTTGCA
GGTAAGTGGAATGGGCTACCCCCAGCTATCAAAACGGTTGCGCTTGATCTATATTATCAATATGGGCAGACT
GGTAATTTTCCAAAATTTCAACAAGCTATAAATAGCCATGATTGGCCGGCAGTCATCCATGAACTTAGAAAC
TGGAATGGTGTACCGAATGATCCTCTCCAGTTCATTACAAAACGATTGGAAGAGCGAGCCAAGTATCTGGCA
ATATCCTTCAACTATGAGCAATGA
Translation:
MAEAIRKDAMMTKLYFDLLNSPAEAHSSIQKSLSVQAISTTVPILEFPSETVYAYASYINALSIGQRIDPAF
TQSLTSAISNLAGRPIAVSDIYQKIHETTLRTPVEMGVRPNSITFEEYQATINQQAINMVQDMQDGDKGEKV
EALQANMQFLYGQEINTDFIARNELAAGQRAKTVAIVQGHITIGYGFDTFVHEASELNSLNLVGSTRQKVLP
ALQLSTSDPGFWSVYALLGQSLTDDDGLLLFSAKARAVVQRIASNQFAGKWNGLPPAIKTVALDLYYQYGQT
GNFPKFQQAINSHDWPAVIHELRNWNGVPNDPLQFITKRLEERAKYLAISFNYEQ*
AnnotationID:2006GeneID:1997
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 19:07:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3997
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21143
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1997

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
106341 gb|AAP84179.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa] 343 99.99 99.99 0 1748.0
3469 PA2223_tr translation of PA2223 357 38.09 52.94 32 574.0
106342 gb|AAG05611.1|AE004649_2 (AE004649) hypothetical protein PA2223 [Pseudomonas aeruginosa PAO1] 357 38.09 52.94 32 574.0
GC ORFID: 44999How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL054Glimmer Score:
Start: 4570389Stop: 4569358
Length: 1032
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL054 343 Homolog: PA2223 / Hypothetical protein / P.aeruginosa / PA01 (AAG05611) translation of RL054Homolog Bit Score 677.0
Other Homologs: t_PA2223 (ORF: BLASTX 220.0)
GC ORF Sequence
ATGGCCGAAGCTATCAGAAAGGATGCAATGATGACAAAACTCTACTTTGATCTTCTGAACTCGCCTGCCGAG
GCTCATTCGTCGATACAAAAGTCTTTATCTGTGCAGGCAATCTCCACAACTGTCCCAATACTGGAGTTTCCT
TCGGAAACCGTATACGCCTATGCATCGTACATAAATGCATTAAGTATCGGTCAACGCATAGATCCTGCATTC
ACCCAGAGCTTAACGAGTGCCATATCCAACCTGGCAGGTCGCCCGATTGCAGTAAGCGACATTTACCAAAAA
ATTCATGAAACCACACTGAGAACACCTGTTGAGATGGGCGTTCGTCCTAATAGCATCACCTTTGAGGAGTAT
CAGGCCACCATAAATCAGCAAGCCATCAACATGGTTCAAGATATGCAGGATGGAGACAAAGGTGAGAAGGTG
GAGGCCCTCCAGGCCAATATGCAGTTCCTGTATGGACAGGAGATAAATACTGATTTCATCGCTCGTAATGAA
CTCGCTGCTGGGCAGAGAGCGAAAACCGTCGCAATAGTTCAGGGGCATATCACCATCGGGTACGGCTTCGAT
ACCTTCGTGCATGAAGCGTCCGAGCTAAACTCTTTGAATCTTGTTGGTTCTACGCGACAGAAGGTATTACCT
GCATTGCAGCTATCAACGTCCGACCCAGGCTTCTGGAGCGTCTATGCCTTGCTGGGACAAAGTCTCACGGAT
GACGATGGGCTATTACTCTTTAGTGCCAAAGCGCGAGCTGTTGTTCAACGCATAGCAAGCAACCAGTTTGCA
GGTAAGTGGAATGGGCTACCCCCAGCTATCAAAACGGTTGCGCTTGATCTATATTATCAATATGGGCAGACT
GGTAATTTTCCAAAATTTCAACAAGCTATAAATAGCCATGATTGGCCGGCAGTCATCCATGAACTTAGAAAC
TGGAATGGTGTACCGAATGATCCTCTCCAGTTCATTACAAAACGATTGGAAGAGCGAGCCAAGTATCTGGCA
ATATCCTTCAACTATGAGCAATGA