ViewGene

Locus Name:
GeneID:
Location:

GeneID:1996
TrivialName: PA14_01190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01190
PAO1 Ortholog Locus:PA0098
Sequence Length:1038
Protein Length:345
Start: 117109
Stop: 118146
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03488.1|AE004448_7 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 342/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGAGCCAGGCCCTGAGCATCGTCGCCTCCGGCATGGTCAGCGCGGTCGGCCTCAGCGCGCCGGCCAGCTGC
GCGGCGATCCGCTGCGCCCTGGACAACTTCCAGGAAACCCGTTTCATCGACCAGGGCGGCGAATGGTTGCTT
GCCGCCAGCGTGCCGCTGGAGCAGCCCTGGCGCGGCCGCGCCAAGCTGCTGAAGATGGCTGCGCGAGCCATC
GACGAGGCCTTGCGCGGCCAGCCCGATCTCGATTGCACGGAGCTGCCGCTGCTGCTCTGCGTCGCCGAGGGC
GACCGTCCCGGACGCTGCGCGGGGCTCGACGAGTCTTTCCTGCGTGACCTGGAAGGCGAGCTGGGACGACGC
TTCCATCCCTCCTCGGCACTCATCGCCCGTGGCCGGGTCGGTGGCGCGGTGGCCCTGCTCAACGCGCGCAAG
CTGATCCAGGGCGGCTGCCGGCAGGTCCTGGTGGCCGGCGTCGACTCCTTCGTCAGCGGCCCGACCCTGGCC
GCCTACGAGGCCCGCGAGCGGCTGCTGACCAGCCAGAACTCCAACGGCTTCATTCCCGGCGAGGGCGCCGCC
GCCGTGCTGGTCGCCGCGCCGCTCCACGAGGAGGCGCCGCAGCTGCTCTGCATCGGCCTCGGCTTCGGCATC
GAGAAGGCCACGGTGGAGAGCGAGGACCTGCCGTTGCGCGCCGACGGCCTGACCCAGGCCGTGCGCGCCGCC
CTCGCCGAGGCTGGCTGCGGCCTGGAGCAGATGGACTACCGGCTCACCGACATTTCCGGCGAGCAGTACTAC
TTCAAGGAGGCCTCGCTGACCCTGAGTCGCAACCTGCGCGTGCTCAAGCCGAAGTTCGACCTCTGGCACCCC
GCCGACTGCATCGGCGAATGCGGCGCCGCCATCGGTCCGGCGTTGCTCGCCGTGGCCCTGGCCGCTTCGTGC
AAGGGCTACGGCGACGGGCCGAACGTGTTCTGCCACCTGGGCAACGATGCCGGCGAACGCGCCGCCGCGCTG
CTCAGCTATCGACGGGTGAGGGCTGCCTGA
Translation:
MSQALSIVASGMVSAVGLSAPASCAAIRCALDNFQETRFIDQGGEWLLAASVPLEQPWRGRAKLLKMAARAI
DEALRGQPDLDCTELPLLLCVAEGDRPGRCAGLDESFLRDLEGELGRRFHPSSALIARGRVGGAVALLNARK
LIQGGCRQVLVAGVDSFVSGPTLAAYEARERLLTSQNSNGFIPGEGAAAVLVAAPLHEEAPQLLCIGLGFGI
EKATVESEDLPLRADGLTQAVRAALAEAGCGLEQMDYRLTDISGEQYYFKEASLTLSRNLRVLKPKFDLWHP
ADCIGECGAAIGPALLAVALAASCKGYGDGPNVFCHLGNDAGERAAALLSYRRVRAA*
AnnotationID:2005GeneID:1996
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 17:05:41
Gene Name:PA0098
Confidence Code:3
GeneProduct:Putative 3-oxoacyl-(acyl-carrier-protein) synthase
Cell Localization:()
Synonyms:PA0098
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0304
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
84% aligned with COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase
Genomic Context:
Comment:
ReferenceID:3995
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21141
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1996

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3468 PA0098_tr translation of PA0098 345 99.13 99.71 0 1747.0
106339 gb|AAG03488.1|AE004448_7 (AE004448) hypothetical protein PA0098 [Pseudomonas aeruginosa PAO1] 345 99.13 99.71 0 1747.0
106340 dbj|BAB49504.1| (AP002999) hypothetical protein [Mesorhizobium loti] 352 41.76 55.96 12 613.0
GC ORFID: 44998How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0098Glimmer Score:
Start: 5918448Stop: 5919485
Length: 1038
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0098 translation of PA0098Homolog Bit Score 677.0
Other Homologs: t_PA0098 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAGGCCCTGAGCATCGTCGCCTCCGGCATGGTCAGCGCGGTCGGCCTCAGCGCGCCGGCCAGCTGC
GCGGCGATCCGCTGCGCCCTGGACAACTTCCAGGAAACCCGTTTCATCGACCAGGGCGGCGAATGGTTGCTT
GCCGCCAGCGTGCCGCTGGAGCAGCCCTGGCGCGGCCGCGCCAAGCTGCTGAAGATGGCTGCGCGAGCCATC
GACGAGGCCTTGCGCGGCCAGCCCGATCTCGATTGCACGGAGCTGCCGCTGCTGCTCTGCGTCGCCGAGGGC
GACCGTCCCGGACGCTGCGCGGGGCTCGACGAGTCTTTCCTGCGTGACCTGGAAGGCGAGCTGGGACGACGC
TTCCATCCCTCCTCGGCACTCATCGCCCGTGGCCGGGTCGGTGGCGCGGTGGCCCTGCTCAACGCGCGCAAG
CTGATCCAGGGCGGCTGCCGGCAGGTCCTGGTGGCCGGCGTCGACTCCTTCGTCAGCGGCCCGACCCTGGCC
GCCTACGAGGCCCGCGAGCGGCTGCTGACCAGCCAGAACTCCAACGGCTTCATTCCCGGCGAGGGCGCCGCC
GCCGTGCTGGTCGCCGCGCCGCTCCACGAGGAGGCGCCGCAGCTGCTCTGCATCGGCCTCGGCTTCGGCATC
GAGAAGGCCACGGTGGAGAGCGAGGACCTGCCGTTGCGCGCCGACGGCCTGACCCAGGCCGTGCGCGCCGCC
CTCGCCGAGGCTGGCTGCGGCCTGGAGCAGATGGACTACCGGCTCACCGACATTTCCGGCGAGCAGTACTAC
TTCAAGGAGGCCTCGCTGACCCTGAGTCGCAACCTGCGCGTGCTCAAGCCGAAGTTCGACCTCTGGCACCCC
GCCGACTGCATCGGCGAATGCGGCGCCGCCATCGGTCCGGCGTTGCTCGCCGTGGCCCTGGCCGCTTCGTGC
AAGGGCTACGGCGACGGGCCGAACGTGTTCTGCCACCTGGGCAACGATGCCGGCGAACGCGCCGCCGCGCTG
CTCAGCTATCGACGGGTGAGGGCTGCCTGA