ViewGene
Locus Name:
GeneID:
Location:

GeneID:1995
TrivialName: PA14_00210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00210
PAO1 Ortholog Locus:PA0020
Sequence Length:1026
Protein Length:341
Start: 21733
Stop: 22758
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03410.1|AE004441_11 (AE004441) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 341/341 (100%), Positives = 341/341 (100%)
Sequence:
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGG
GAAGGGCATCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGC
CAGCCATGGAAGTGGCCGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGC
GACACCCTCAGCCTGGTCTACGTCGATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACC
ATCAAGCTGTCGCCGAAGATCCGCAGCACGCCGATCGCCGAGGCTATCCCGACCATCCCGCTGGACAAGATC
AACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGAAGACCTTCACCAGTGCGCCGTACATCGTCGCC
GGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCCCGCGGCAAGTTCGCCGACGGCCAG
CCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGAAGTCCTCGGCATCAAC
GCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGACCCGCACC
ACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTC
GACGTGGTCACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTC
GGCGAGACGGTGCGCGACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATG
GTGTTCCGTACCTACAAGAAGCTGAGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGAC
AGGGTGCAGAATCCCTGA
Translation:
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPG
DTLSLVYVDGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVA
GNAERIVSGTGDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRT
TQEVRLGDRLFPTEERAVNSTFMPGEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKV
GETVRDRVTGESVKIPDERAGLLMVFRTYKKLSYALVLMASRPLSVTDRVQNP*
AnnotationID:2004GeneID:1995
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 11:11:01
Gene Name:
Confidence Code:3
GeneProduct:putative lysin domain
Cell Localization:()
Synonyms:PA0020
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01476,cd00118
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53730.1| (AE016856) LysM domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 341

 Score =  515 bits (1327), Expect = e-145
 Identities = 249/341 (73%), Positives = 291/341 (85%)








 
Structural Features:
pfam01476, LysM, LysM domain.
CD-Length = 44 residues,  97.7% aligned
Score = 44.2 bits (105), Expect = 2e-05
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

cd00118, LysM, Lysin domain, found in a variety of enzymes involved 
in bacterial cell wall degradation.
CD-Length = 46 residues,  93.5% aligned
Score = 41.2 bits (97), Expect = 2e-04
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3993




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33384




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1995_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1995
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3467
                           PA0020_tr
                           translation of PA0020
                           341
                           99.99
                           99.99
                           0
                           1746.0
     

     
     
106336
                           gb|AAG03410.1|AE004441_11
                           (AE004441) hypothetical protein PA0020 [Pseudomonas aeruginosa PAO1]
                           341
                           99.99
                           99.99
                           0
                           1746.0
     

     
     
106337
                           gb|AAO53730.1|
                           (AE016856) LysM domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           73.02
                           85.33
                           0
                           1327.0
     

     
     
106338
                           gb|AAQ61926.1|
                           (AE016925) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           358
                           41.06
                           57.82
                           30
                           614.0
     

     






      

          
GC ORFID: 44997How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0020Glimmer Score: 

          
Start: 5823070Stop: 5824095

          
Length: 1026


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0020 translation of PA0020Homolog Bit Score 677.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2981 (ORF: BLASTX 511.0), t_PA0020 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGG 
GAAGGGCATCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGC 
CAGCCATGGAAGTGGCCGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGC 
GACACCCTCAGCCTGGTCTACGTCGATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACC 
ATCAAGCTGTCGCCGAAGATCCGCAGCACGCCGATCGCCGAGGCTATCCCGACCATCCCGCTGGACAAGATC 
AACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGAAGACCTTCACCAGTGCGCCGTACATCGTCGCC 
GGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCCCGCGGCAAGTTCGCCGACGGCCAG 
CCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGAAGTCCTCGGCATCAAC 
GCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGACCCGCACC 
ACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC 
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTC 
GACGTGGTCACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTC 
GGCGAGACGGTGCGCGACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATG 
GTGTTCCGTACCTACAAGAAGCTGAGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGAC 
AGGGTGCAGAATCCCTGA