ViewGene
Locus Name:
GeneID:
Location:

GeneID:1994
TrivialName: PA14_71100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71100
PAO1 Ortholog Locus:PA5383
Sequence Length:1068
Protein Length:355
Start: 6334259
Stop: 6335326
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08768.1|AE004951_2 (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 352/355 (99%), Positives = 353/355 (99%)
Sequence:
ATGCACACCCTCCCCGTCAAGACCGGTACCAGACCCCTGGCCCAGGTCCAGAAACTCATCCCCGGCCTGCTG
CTCAGCGCCGCCCTGGCCGGCGCGGCGATCCTCCTGGGTCGTTCGCAATGGTTGCAGCACAACGGCATCAGC
GCGCTGACCCTGGCCATCGTGCTCGGCATCGTCGTCGGCAACACCCTGTACCCTCGGATCGCCGCCGGCAGC
GCCGCCGGCGTCGGCTTCTCCAAGCAGATCCTGCTGCGCGCCGGGATCATCCTCTACGGCCTGCGCCTGACC
TTCCAGGACATCGCCGGCGTCGGATTGCACGGCGTGCTGCTGGACGCCCTGATGCTCGCCAGCACCTTCGGC
CTGGCGTGCCTGCTCGGCACCCGGCTGTTCGGCCTGGACCGCACCACCACCCTGCTGATCGGCGCCGGCAGT
TCGATCTGCGGCGCCGCCGCGGTGATGGCCACCGAGCCGGTGGTGCGCGGCCGCGCCGAACAGGTCGCGGTG
GCGGTCTCCACCGTAGTGGTGTTCGGCACCCTGGGCATCTTCCTCTATCCGGCGCTGTTCCAGTCCGACCAG
GACTGGGGGCTGCTGCCACGCGACCCTGGCACCTGGGGCGTGTACATCGGCGCCACGGTGCACGAGGTGGCC
CAGGTGGTCGCCGCGGGTCGCTCGATCGGCATCGAGGCAGCGGATACCGCAGTGATCGCCAAGATGGTCCGG
GTAATGATGTTGGCGCCCTTCCTGATCCTGCTCTCGGCCTGGCTGGCACGCGACAAGGCGCACCGCCGGCAG
CACAGCGGCGCGACCAAGATCACCATTCCCTGGTTCGCCGTCGGCTTCGTACTGGTCGCCGGGCTCAACTCG
CTGGTCAGCCTGCCGCCGGCGCTGGTCAGCCACGTCAACGACCTCGACACCTTCCTCCTGGCCATGGCGATG
GCCGGCCTCGGCCTCGGCACGCACCTCTCGGCGATCCGCCGCGCCGGCCTCAAGCCGCTGCTGCTGGCCGCC
CTGCTATTCGCCTGGCTGGTGCTCGGCGGTGGATTCCTCACCCGCCTGGCGCTCGCCTGA
Translation:
MHTLPVKTGTRPLAQVQKLIPGLLLSAALAGAAILLGRSQWLQHNGISALTLAIVLGIVVGNTLYPRIAAGS
AAGVGFSKQILLRAGIILYGLRLTFQDIAGVGLHGVLLDALMLASTFGLACLLGTRLFGLDRTTTLLIGAGS
SICGAAAVMATEPVVRGRAEQVAVAVSTVVVFGTLGIFLYPALFQSDQDWGLLPRDPGTWGVYIGATVHEVA
QVVAAGRSIGIEAADTAVIAKMVRVMMLAPFLILLSAWLARDKAHRRQHSGATKITIPWFAVGFVLVAGLNS
LVSLPPALVSHVNDLDTFLLAMAMAGLGLGTHLSAIRRAGLKPLLLAALLFAWLVLGGGFLTRLALA*
AnnotationID:2003GeneID:1994
AnnotatorUID: diggins
Modification Date/Time: 2004-10-12 22:10:08
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yeiH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC90137.1| (AJ414147) putative membrane protein [Yersinia pestis CO92]
          Length = 362

 Score =  369 bits (946), Expect = e-101
 Identities = 199/352 (56%), Positives = 256/352 (72%), Gaps = 9/352 (2%)

>gb|AAN81149.1|AE016763_108 (AE016763) Hypothetical protein yeiH [Escherichia coli CFT073]
          Length = 349

 Score =  358 bits (918), Expect = 4e-98
 Identities = 195/329 (59%), Positives = 246/329 (74%), Gaps = 8/329 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3991




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21137




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34718




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1994_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1994
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3466
                           PA5383_tr
                           translation of PA5383
                           355
                           99.15
                           99.43
                           0
                           1746.0
     

     
     
106310
                           gb|AAG08768.1|AE004951_2
                           (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           355
                           99.15
                           99.43
                           0
                           1746.0
     

     
     
106315
                           gb|AAN81149.1|AE016763_108
                           (AE016763) Hypothetical protein yeiH [Escherichia coli CFT073]
                           359
                           55.43
                           71.58
                           14
                           918.0
     

     
     
106312
                           emb|CAC90137.1|
                           (AJ414147) putative membrane protein [Yersinia pestis CO92]
                           365
                           55.34
                           71.50
                           13
                           957.0
     

     
     
106320
                           gb|AAQ58439.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           359
                           54.87
                           68.24
                           22
                           917.0
     

     






      

          
GC ORFID: 44996How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5383Glimmer Score: 

          
Start: 5597948Stop: 5599015

          
Length: 1068


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5383 translation of PA5383Homolog Bit Score 677.0

          
Other Homologs:  t_PA5383 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACACCCTCCCCGTCAAGACCGGTACCAGACCCCTGGCCCAGGTCCAGAAACTCATCCCCGGCCTGCTG 
CTCAGCGCCGCCCTGGCCGGCGCGGCGATCCTCCTGGGTCGTTCGCAATGGTTGCAGCACAACGGCATCAGC 
GCGCTGACCCTGGCCATCGTGCTCGGCATCGTCGTCGGCAACACCCTGTACCCTCGGATCGCCGCCGGCAGC 
GCCGCCGGCGTCGGCTTCTCCAAGCAGATCCTGCTGCGCGCCGGGATCATCCTCTACGGCCTGCGCCTGACC 
TTCCAGGACATCGCCGGCGTCGGATTGCACGGCGTGCTGCTGGACGCCCTGATGCTCGCCAGCACCTTCGGC 
CTGGCGTGCCTGCTCGGCACCCGGCTGTTCGGCCTGGACCGCACCACCACCCTGCTGATCGGCGCCGGCAGT 
TCGATCTGCGGCGCCGCCGCGGTGATGGCCACCGAGCCGGTGGTGCGCGGCCGCGCCGAACAGGTCGCGGTG 
GCGGTCTCCACCGTAGTGGTGTTCGGCACCCTGGGCATCTTCCTCTATCCGGCGCTGTTCCAGTCCGACCAG 
GACTGGGGGCTGCTGCCACGCGACCCTGGCACCTGGGGCGTGTACATCGGCGCCACGGTGCACGAGGTGGCC 
CAGGTGGTCGCCGCGGGTCGCTCGATCGGCATCGAGGCAGCGGATACCGCAGTGATCGCCAAGATGGTCCGG 
GTAATGATGTTGGCGCCCTTCCTGATCCTGCTCTCGGCCTGGCTGGCACGCGACAAGGCGCACCGCCGGCAG 
CACAGCGGCGCGACCAAGATCACCATTCCCTGGTTCGCCGTCGGCTTCGTACTGGTCGCCGGGCTCAACTCG 
CTGGTCAGCCTGCCGCCGGCGCTGGTCAGCCACGTCAACGACCTCGACACCTTCCTCCTGGCCATGGCGATG 
GCCGGCCTCGGCCTCGGCACGCACCTCTCGGCGATCCGCCGCGCCGGCCTCAAGCCGCTGCTGCTGGCCGCC 
CTGCTATTCGCCTGGCTGGTGCTCGGCGGTGGATTCCTCACCCGCCTGGCGCTCGCCTGA