ViewGene
Locus Name:
GeneID:
Location:

GeneID:1993
TrivialName: PA14_68340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68340
PAO1 Ortholog Locus:PA5172
Sequence Length:1011
Protein Length:336
Start: 6095892
Stop: 6096902
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08557.1|AE004930_3 (AE004930) ornithine carbamoyltransferase, catabolic [Pseudomonas aeruginosa PAO1]
Identities = 335/336 (99%), Positives = 336/336 (100%)
Sequence:
ATGGCTTTCAACATGCACAACCGTAACCTGCTCAGCCTGATGCACCACAGCACCCGCGAGCTGCGTTACCTG
CTCGACCTGTCCCGCGATCTCAAGCGCGCCAAGTACACCGGCACCGAGCAGCAGCACCTGCAACGCAAGAAC
ATCGCCCTGATCTTCGAGAAGACCTCCACCCGCACCCGCTGCGCCTTCGAGGTGGCCGCCTACGACCAGGGC
GCCAACGTCACCTACATCGACCCGAACTCCTCGCAGATCGGCCACAAGGAGAGCATGAAGGACACCGCGCGG
GTCCTCGGCCGGATGTACGACGCCATCGAGTACCGCGGCTTCAAGCAGGAAATCGTCGAGGAACTCGCGAAG
TTCGCCGGCGTTCCGGTGTTCAACGGCCTGACCGACGAATACCACCCGACCCAGATGCTCGCCGACGTGCTG
ACCATGCGCGAGCACAGCGACAAGCCGCTGCACGACATCAGCTACGCCTACCTGGGCGACGCGCGCAACAAC
ATGGGCAACTCCCTGCTGCTGATCGGCGCCAAGCTCGGCATGGACGTACGCATCGCCGCACCGAAGGCGCTC
TGGCCGCACGACGAGTTCGTCGCCCAGTGCAAGAAATTCGCCGAGGAAAGCGGCGCCAAGCTGACCCTCACC
GAGGATCCGAAGGAAGCCGTGAAGGGCGTGGACTTCGTCCACACCGACGTCTGGGTGTCGATGGGCGAGCCG
GTGGAAGCCTGGGGCGAGCGGATCAAGGAACTGCTGCCCTACCAGGTCAACATGGAGATCATGAAGGCCACC
GGCAACCCGCGGGCCAAGTTCATGCACTGCCTGCCGGCGTTCCACAACAGCGAGACCAAGGTCGGCAAGCAG
ATCGCCGAGCAGTATCCGAACCTGGCCAACGGCATCGAGGTGACCGAGGACGTCTTCGAGTCGCCCTACAAC
ATCGCCTTCGAGCAGGCCGAGAACCGCATGCACACCATCAAGGCGATCCTCGTCTCGACCCTCGCCGACATC
TGA
Translation:
MAFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLQRKNIALIFEKTSTRTRCAFEVAAYDQG
ANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVL
TMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT
EDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQ
IAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI*
AnnotationID:2002GeneID:1993
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 18:06:10
Gene Name:arcB
Confidence Code:1
GeneProduct:ornithine carbamoyltransferase, catabolic
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0078
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Arginine and proline metabolism;
Urea cycle and metabolism of amino groups
Homology:






 
Structural Features:






   
Genomic Context:
3-gene arginine deiminase cluster arcCBA, 
followed by arginine/ornithine antiporter arcD






   
Comment:


















    ReferenceID:3989




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16996




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA5172_CDS.cgi


    		




 
URL:

















    ReferenceID:21135




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1993
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3465
                           PA5172_tr
                           translation of PA5172
                           336
                           99.70
                           99.99
                           0
                           1747.0
     

     
     
106147
                           gb|AAG08557.1|AE004930_3
                           (AE004930) ornithine carbamoyltransferase, catabolic [Pseudomonas aeruginosa PAO1]
                           336
                           99.70
                           99.99
                           0
                           1747.0
     

     
     
106148
                           emb|CAA29124.1|
                           (X05637) unnamed protein product [Pseudomonas aeruginosa]
                           336
                           99.70
                           99.99
                           0
                           1747.0
     

     
     
106149
                           emb|CAD10424.1|
                           (AJ417700) ornithine transcarbamoylase [Pseudomonas mendocina]
                           336
                           94.34
                           97.61
                           0
                           1668.0
     

     
     
106150
                           gb|AAN66625.1|AE016290_3
                           (AE016777) ornithine carbamoyltransferase, catabolic [Pseudomonas putida KT2440]
                           336
                           91.66
                           96.72
                           0
                           1630.0
     

     






      

          
GC ORFID: 44995How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5172Glimmer Score: 

          
Start: 5359578Stop: 5360588

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5172 translation of PA5172Homolog Bit Score 677.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6692 (ORF: BLASTX 590.0), t_PA5172 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTTTCAACATGCACAACCGTAACCTGCTCAGCCTGATGCACCACAGCACCCGCGAGCTGCGTTACCTG 
CTCGACCTGTCCCGCGATCTCAAGCGCGCCAAGTACACCGGCACCGAGCAGCAGCACCTGCAACGCAAGAAC 
ATCGCCCTGATCTTCGAGAAGACCTCCACCCGCACCCGCTGCGCCTTCGAGGTGGCCGCCTACGACCAGGGC 
GCCAACGTCACCTACATCGACCCGAACTCCTCGCAGATCGGCCACAAGGAGAGCATGAAGGACACCGCGCGG 
GTCCTCGGCCGGATGTACGACGCCATCGAGTACCGCGGCTTCAAGCAGGAAATCGTCGAGGAACTCGCGAAG 
TTCGCCGGCGTTCCGGTGTTCAACGGCCTGACCGACGAATACCACCCGACCCAGATGCTCGCCGACGTGCTG 
ACCATGCGCGAGCACAGCGACAAGCCGCTGCACGACATCAGCTACGCCTACCTGGGCGACGCGCGCAACAAC 
ATGGGCAACTCCCTGCTGCTGATCGGCGCCAAGCTCGGCATGGACGTACGCATCGCCGCACCGAAGGCGCTC 
TGGCCGCACGACGAGTTCGTCGCCCAGTGCAAGAAATTCGCCGAGGAAAGCGGCGCCAAGCTGACCCTCACC 
GAGGATCCGAAGGAAGCCGTGAAGGGCGTGGACTTCGTCCACACCGACGTCTGGGTGTCGATGGGCGAGCCG 
GTGGAAGCCTGGGGCGAGCGGATCAAGGAACTGCTGCCCTACCAGGTCAACATGGAGATCATGAAGGCCACC 
GGCAACCCGCGGGCCAAGTTCATGCACTGCCTGCCGGCGTTCCACAACAGCGAGACCAAGGTCGGCAAGCAG 
ATCGCCGAGCAGTATCCGAACCTGGCCAACGGCATCGAGGTGACCGAGGACGTCTTCGAGTCGCCCTACAAC 
ATCGCCTTCGAGCAGGCCGAGAACCGCATGCACACCATCAAGGCGATCCTCGTCTCGACCCTCGCCGACATC 
TGA