ViewGene
Locus Name:
GeneID:
Location:

GeneID:1991
TrivialName: PA14_12090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12090
PAO1 Ortholog Locus:PA4000
Sequence Length:1026
Protein Length:341
Start: 1045017
Stop: 1046042
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07387.1|AE004817_11 (AE004817) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/342 (99%), Positives = 340/342 (99%), Gaps = 1/342 (0%)
Sequence:
TTGAGCAAGCGTGTCCGCTCCTCCCTGATCCTGCCCGCCGTCTGCGGCCTCGGGCTGGCGGCCGTGCTGTTG
AGCAGTTGCTCCAGCAAGGCGCCCCAGCAGCCGGCCAGGCAGGCGGGCATTTCCGGGCCGGGCGACTATTCC
CGTCCGCATCGCGACGGCGCCCCCTGGTGGGACGTCGACGTGTCGCGGATCCCCGATGCGGTGCCGATGCCG
CACAACGGTTCGGTGAAGGCCAACCCCTACACCGTGCTGGGCAAGACCTACTACCCGATGAACGATGCGCGG
GCCTACCGGATGGTCGGCACCGCGTCCTGGTACGGCACCAAGTTCCACGGCCAGGCCACCGCCAACGGCGAG
ACCTACGACCTCTACGGCATGACCGCCGCGCACAAGACCCTGCCGTTGCCGAGCTACGTGCGGGTGACCAAC
CTGGACAACGGCAAGAGCGTGATCGTCCGCGTCAACGACCGCGGCCCGTTCTATTCCGACCGGGTCATCGAC
CTGTCCTTCGCCGCGGCGAAGAAGCTCGGCTATGCCGAGACCGGCACCGCGCGGGTCAAGGTCGAAGGCATC
GACCCGGTGCAGTGGTGGGCCCAGCGCGGCCGGCCGGCACCGATGGTCCTGGCGCAGCCCAAGCAGGCGGTG
GCCCAGGCCCCCGCTGCGACGCAAACTCAGGCGGTGGCGATGGCCCAGCCGATCGAGACCTACACCCCGCCG
CCGGCGCAGCACGCGGCCGCCGTGCTGCCGGTGCAGATCGACTCAAAAAAAAACGCTTCATTACCAGCCGAT
GGCCTGTATCTCCAGGTGGGCGCCTTCGCCAACCCGGATGCAGCGGAGCTGCTGAAGGCCAAGCTGAGCGGC
GTGACGGCTGCGCCGGTGTTTATCAGCTCGGTCGTACGCAACCAGCAGATTCTGCACCGGGTGCGGCTGGGA
CCGATCGGTTCGGCGGACGAGGTTAGCCGCACCCAGGACAGCATCCGCGTGGCCAACCTTGGCCAGCCGACG
CTGGTACGCCCCGACTGA
Translation:
MSKRVRSSLILPAVCGLGLAAVLLSSCSSKAPQQPARQAGISGPGDYSRPHRDGAPWWDVDVSRIPDAVPMP
HNGSVKANPYTVLGKTYYPMNDARAYRMVGTASWYGTKFHGQATANGETYDLYGMTAAHKTLPLPSYVRVTN
LDNGKSVIVRVNDRGPFYSDRVIDLSFAAAKKLGYAETGTARVKVEGIDPVQWWAQRGRPAPMVLAQPKQAV
AQAPAATQTQAVAMAQPIETYTPPPAQHAAAVLPVQIDSKKNASLPADGLYLQVGAFANPDAAELLKAKLSG
VTAAPVFISSVVRNQQILHRVRLGPIGSADEVSRTQDSIRVANLGQPTLVRPD*
AnnotationID:2000GeneID:1991
AnnotatorUID: urbach
Modification Date/Time: 2004-09-13 15:03:19
Gene Name:
Confidence Code:4
GeneProduct:possible lipoprotein, rlpA family
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0797,pfam03330
Secondary Functional Category(ies):Cell envelope biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07387.1|AE004817_11 (AE004817) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 342
Score =  678 bits (1749), Expect = 0.0
Identities = 340/342 (99%), Positives = 340/342 (99%), Gaps = 1/342 (0%)






 
Structural Features:
gnl|CDD|10665 COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]
Length = 233
Score =  190 bits (482), Expect = 7e-49
Identities = 89/233 (38%), Positives = 119/233 (51%), Gaps = 13/233 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14473




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1991
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3462
                           PA4000_tr
                           translation of PA4000
                           342
                           99.41
                           99.41
                           1
                           1750.0
     

     
     
106098
                           gb|AAG07387.1|AE004817_11
                           (AE004817) hypothetical protein PA4000 [Pseudomonas aeruginosa PAO1]
                           342
                           99.12
                           99.41
                           1
                           1748.0
     

     
     
106099
                           gb|AAD32233.1|AF147448_4
                           (AF147448) rare lipoprotein A [Pseudomonas aeruginosa]
                           342
                           99.12
                           99.41
                           1
                           1748.0
     

     
     
106100
                           gb|AAO58251.1|
                           (AE016873) lipoprotein, rlpA family [Pseudomonas syringae pv. tomato str. DC3000]
                           354
                           64.97
                           77.68
                           25
                           1154.0
     

     
     
106101
                           gb|AAN70373.1|AE016679_5
                           (AE016792) lipoprotein, rare lipoprotein A family [Pseudomonas putida KT2440]
                           351
                           63.81
                           73.21
                           28
                           1103.0
     

     






      

          
GC ORFID: 44993How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4000Glimmer Score: 

          
Start: 3908921Stop: 3907896

          
Length: 1026


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4000 translation of PA4000Homolog Bit Score 677.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5329 (ORF: BLASTX 445.0), t_PA4000 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGCAAGCGTGTCCGCTCCTCCCTGATCCTGCCCGCCGTCTGCGGCCTCGGGCTGGCGGCCGTGCTGTTG 
AGCAGTTGCTCCAGCAAGGCGCCCCAGCAGCCGGCCAGGCAGGCGGGCATTTCCGGGCCGGGCGACTATTCC 
CGTCCGCATCGCGACGGCGCCCCCTGGTGGGACGTCGACGTGTCGCGGATCCCCGATGCGGTGCCGATGCCG 
CACAACGGTTCGGTGAAGGCCAACCCCTACACCGTGCTGGGCAAGACCTACTACCCGATGAACGATGCGCGG 
GCCTACCGGATGGTCGGCACCGCGTCCTGGTACGGCACCAAGTTCCACGGCCAGGCCACCGCCAACGGCGAG 
ACCTACGACCTCTACGGCATGACCGCCGCGCACAAGACCCTGCCGTTGCCGAGCTACGTGCGGGTGACCAAC 
CTGGACAACGGCAAGAGCGTGATCGTCCGCGTCAACGACCGCGGCCCGTTCTATTCCGACCGGGTCATCGAC 
CTGTCCTTCGCCGCGGCGAAGAAGCTCGGCTATGCCGAGACCGGCACCGCGCGGGTCAAGGTCGAAGGCATC 
GACCCGGTGCAGTGGTGGGCCCAGCGCGGCCGGCCGGCACCGATGGTCCTGGCGCAGCCCAAGCAGGCGGTG 
GCCCAGGCCCCCGCTGCGACGCAAACTCAGGCGGTGGCGATGGCCCAGCCGATCGAGACCTACACCCCGCCG 
CCGGCGCAGCACGCGGCCGCCGTGCTGCCGGTGCAGATCGACTCAAAAAAAAACGCTTCATTACCAGCCGAT 
GGCCTGTATCTCCAGGTGGGCGCCTTCGCCAACCCGGATGCAGCGGAGCTGCTGAAGGCCAAGCTGAGCGGC 
GTGACGGCTGCGCCGGTGTTTATCAGCTCGGTCGTACGCAACCAGCAGATTCTGCACCGGGTGCGGCTGGGA 
CCGATCGGTTCGGCGGACGAGGTTAGCCGCACCCAGGACAGCATCCGCGTGGCCAACCTTGGCCAGCCGACG 
CTGGTACGCCCCGACTGA