ViewGene
Locus Name:
GeneID:
Location:

GeneID:1990
TrivialName: PA14_14860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14860
PAO1 Ortholog Locus:PA3804
Sequence Length:1044
Protein Length:347
Start: 1261958
Stop: 1263001
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07191.1|AE004798_14 (AE004798) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 345/347 (99%), Positives = 346/347 (99%)
Sequence:
ATGATGAAAGCGCCGCAGCCCGAAGTCGTAGCCACCGCTTCCCGTCAGAACCCCGGGGAAACCCTGCGCCAG
GCGCGCGAGCAGAAGGGCTTGTCGTTGTCGCAGGTGGCCGGGCAACTGAACCTGACCGAGAATTCGCTGCGT
CAGCTGGAAAACGGCGCGTTCGACAAGCTGCCGGGGCACACCTTCTCGCGCGGCTACATCCGCGCCTACGCC
AAGCTCATGGGCCTCGACCAGGCCGAGCTGGTCAACAGCTTCGACCATTTCACCGGCACCAATGCCAGCGGC
AGCACCGTACAGAGCCTGGGACGGGTCGCCGAGCCGGTGCGCCTGTCGCGCAACGTGCTGCGTATCGTCAGC
CTGTTACTGCTCGCCCTGCTGATCGGCTTCGGCTACTTCTGGTGGCAGGAGCATTCCGCGCGCACGCCGGAA
ACCGCCGGTCTGAGCCTCGAGCATGTCGAAGTGGAAAGCGCCGACGGCACCACCGAGATCCATACCCTGGAC
GAGCCTGAAGACCAGGCGGTGATCGAAGCGCAGAAGGAAGGCGAGCAAGCGCCCGCCGAGGTTTCTCCGGAA
GTCGCCGCCCAGGCCGAGGGTTCGCCGCCGGTGGCGAGCGAGGGCGCGCAGGTTCCCGCCGCTCCGGCCCAG
GGCACCCCCGCCGCGCCCCAGCAGCCTGTTACCGCCGCGCCTGCCGGCACGGCTCCTGCTCCCGGTAATGCT
CCAGCCGTTCCGGCGACGGCCAGTCCGGCCGCCCCGCCAGCGCCGAGCGAACCTGCCGCCGCGCCCGTGGTG
GCCGGCGAGGGCCAGGGGGTGGTCAAGGTACAGTTCGTCGCCGATTGCTGGACCCAGGTCACCGACGCCAAC
GGCAAGGTCCTGGTCAGCGCGCTGAAGCGCAAGGGCGACAGCCTGGAACTGGCCGGCAAGGCCCCGCTGGAG
CTGCGCCTCGGTTTCGCTCGCGGCGCCCAGGTCAGCTACAACGGCCAGCCGGTGGACGTGACCCCCTTCGTC
CGCGGCGAAACGGCCCGTCTGAAGGTAGGACAATGA
Translation:
MMKAPQPEVVATASRQNPGETLRQAREQKGLSLSQVAGQLNLTENSLRQLENGAFDKLPGHTFSRGYIRAYA
KLMGLDQAELVNSFDHFTGTNASGSTVQSLGRVAEPVRLSRNVLRIVSLLLLALLIGFGYFWWQEHSARTPE
TAGLSLEHVEVESADGTTEIHTLDEPEDQAVIEAQKEGEQAPAEVSPEVAAQAEGSPPVASEGAQVPAAPAQ
GTPAAPQQPVTAAPAGTAPAPGNAPAVPATASPAAPPAPSEPAAAPVVAGEGQGVVKVQFVADCWTQVTDAN
GKVLVSALKRKGDSLELAGKAPLELRLGFARGAQVSYNGQPVDVTPFVRGETARLKVGQ*
AnnotationID:1999GeneID:1990
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3804
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66477.1|AE016276_12 (AE016777) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 335

 Score =  374 bits (960), Expect = e-103
 Identities = 210/351 (59%), Positives = 244/351 (69%), Gaps = 21/351 (5%)

>gb|AAL21418.1| (AE008814) putative membrane protein [Salmonella typhimurium LT2]
          Length = 334

 Score =  145 bits (367), Expect = 3e-34
 Identities = 108/333 (32%), Positives = 160/333 (48%), Gaps = 26/333 (7%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3983




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31753




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1990_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1990
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3461
                           PA3804_tr
                           translation of PA3804
                           347
                           99.42
                           99.71
                           0
                           1748.0
     

     
     
106095
                           gb|AAG07191.1|AE004798_14
                           (AE004798) hypothetical protein PA3804 [Pseudomonas aeruginosa PAO1]
                           347
                           99.42
                           99.71
                           0
                           1748.0
     

     
     
106096
                           gb|AAO54954.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           359
                           59.61
                           68.80
                           40
                           1010.0
     

     
     
106097
                           gb|AAN66477.1|AE016276_12
                           (AE016777) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440]
                           360
                           59.44
                           68.61
                           38
                           986.0
     

     






      

          
GC ORFID: 44992How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3804Glimmer Score: 

          
Start: 3691980Stop: 3690937

          
Length: 1044


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3804 translation of PA3804Homolog Bit Score 677.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4527 (ORF: BLASTX 386.0), t_PA3804 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGAAAGCGCCGCAGCCCGAAGTCGTAGCCACCGCTTCCCGTCAGAACCCCGGGGAAACCCTGCGCCAG 
GCGCGCGAGCAGAAGGGCTTGTCGTTGTCGCAGGTGGCCGGGCAACTGAACCTGACCGAGAATTCGCTGCGT 
CAGCTGGAAAACGGCGCGTTCGACAAGCTGCCGGGGCACACCTTCTCGCGCGGCTACATCCGCGCCTACGCC 
AAGCTCATGGGCCTCGACCAGGCCGAGCTGGTCAACAGCTTCGACCATTTCACCGGCACCAATGCCAGCGGC 
AGCACCGTACAGAGCCTGGGACGGGTCGCCGAGCCGGTGCGCCTGTCGCGCAACGTGCTGCGTATCGTCAGC 
CTGTTACTGCTCGCCCTGCTGATCGGCTTCGGCTACTTCTGGTGGCAGGAGCATTCCGCGCGCACGCCGGAA 
ACCGCCGGTCTGAGCCTCGAGCATGTCGAAGTGGAAAGCGCCGACGGCACCACCGAGATCCATACCCTGGAC 
GAGCCTGAAGACCAGGCGGTGATCGAAGCGCAGAAGGAAGGCGAGCAAGCGCCCGCCGAGGTTTCTCCGGAA 
GTCGCCGCCCAGGCCGAGGGTTCGCCGCCGGTGGCGAGCGAGGGCGCGCAGGTTCCCGCCGCTCCGGCCCAG 
GGCACCCCCGCCGCGCCCCAGCAGCCTGTTACCGCCGCGCCTGCCGGCACGGCTCCTGCTCCCGGTAATGCT 
CCAGCCGTTCCGGCGACGGCCAGTCCGGCCGCCCCGCCAGCGCCGAGCGAACCTGCCGCCGCGCCCGTGGTG 
GCCGGCGAGGGCCAGGGGGTGGTCAAGGTACAGTTCGTCGCCGATTGCTGGACCCAGGTCACCGACGCCAAC 
GGCAAGGTCCTGGTCAGCGCGCTGAAGCGCAAGGGCGACAGCCTGGAACTGGCCGGCAAGGCCCCGCTGGAG 
CTGCGCCTCGGTTTCGCTCGCGGCGCCCAGGTCAGCTACAACGGCCAGCCGGTGGACGTGACCCCCTTCGTC 
CGCGGCGAAACGGCCCGTCTGAAGGTAGGACAATGA