ViewGene

Locus Name:
GeneID:
Location:

GeneID:1989
TrivialName: PA14_17510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17510
PAO1 Ortholog Locus:PA3619
Sequence Length:1008
Protein Length:335
Start: 1504617
Stop: 1503610
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07007.1|AE004782_5 (AE004782) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 332/335 (99%), Positives = 332/335 (99%)
Sequence:
ATGAACATCGCGCCACTCAAGGTCTCTCTGCTCTCCCTCGCCCTGCTCCTCTCCCCCGTAGCCAGCCTCCCC
GCCCATGCGGCCTGCACCGCCAACCTGGCCCTGCAACCCGCCAGCAGCCTGCCCGCGCTCGGCGGGCGCCTG
GTCTACCACAGCTATATGGAGTACGGGGACGGCTCCTCGAACCTCTACCTGCACGATTTCAAGAGCAAGAGC
ACCCGCCAGCTCAACCAGCCCGGCTGGAACATCGAGGACCCGATGAATGCGCATTTCTCCCCGGACGGCCGC
TACCTGACCTTCATGGGCCGCCAGAATGGCGCCTGGCACGTGTTCGCCTGGGCCATCGGCGGTACCCAGGCG
CCGAGCAACCTGACCGCGGCCATCGGCGGTCGCAACGAGGACCCGAAGTTCTCCTTCGATGGCCGCCAGGTC
GTGCTCAAGCACGAGGGCGACATCCGCCTCGCCACCCTGGTCTTCAATGGCGATGGCAGCGTCGGCGTGAGC
GCCTGGAAAGCCGTGACCAGCGACGGCTGGAGCACCGAGGAGTCGATGCCGTTCCTCACCCCCTCAGGCAAG
TACGTGGTCTACGCGACAGGAGCCGGCGACAGCCTGCGGGTGGTGCGCAGGAACCTGGAGAACGGCCAGGTC
AGCCCCCTCGCCACCCCGGCCGCGGGGGGCCGCGACTATTACCCGGTGGTACGCGACTACACCGCCTACTTC
CTCTCGCGTACCCAGCCGGCCGGCAACGACCAGTTGGCCATGGTCGTACCCAACAGCCCGCCCGGCACCCCG
GCGATCCTGCCGCTCAACCACTGCCAGGGCGACAATTCCGATGCCGCGCCGGTGAACGAGGACTACCTGATC
TTCTCCAGCACTTCGTTCGACCCGACCTACAGCCTGCTCCTCGGTGACATCGCCGCGGCGCGGGTCTGGCGT
CTCGACCCGGCGCAGATCAACCTGCCCGACGGTCGGCAGAAGCTCGGCGCCAGCTATACCGCGGCACGCTGA
Translation:
MNIAPLKVSLLSLALLLSPVASLPAHAACTANLALQPASSLPALGGRLVYHSYMEYGDGSSNLYLHDFKSKS
TRQLNQPGWNIEDPMNAHFSPDGRYLTFMGRQNGAWHVFAWAIGGTQAPSNLTAAIGGRNEDPKFSFDGRQV
VLKHEGDIRLATLVFNGDGSVGVSAWKAVTSDGWSTEESMPFLTPSGKYVVYATGAGDSLRVVRRNLENGQV
SPLATPAAGGRDYYPVVRDYTAYFLSRTQPAGNDQLAMVVPNSPPGTPAILPLNHCQGDNSDAAPVNEDYLI
FSSTSFDPTYSLLLGDIAAARVWRLDPAQINLPDGRQKLGASYTAAR*
AnnotationID:1998GeneID:1989
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 18:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative TolB-like translocation protein
Cell Localization:()
Synonyms:PA3619
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0823
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD17430.1| (AL646077) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 475

 Score =  235 bits (599), Expect = 3e-61
 Identities = 125/311 (40%), Positives = 178/311 (57%), Gaps = 4/311 (1%)

Structural Features:
COG0823, TolB, Periplasmic component of the Tol biopolymer transport system 
[Intracellular trafficking and secretion]
CD-Length = 425 residues, only  72.5% aligned
Score =  161 bits (408), Expect = 3e-40
Identities = 68/332 (20%), Positives = 112/332 (33%), Gaps = 24/332 (7%)
Genomic Context:
Comment:
ReferenceID:3981
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21127
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31923
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1989_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1989

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3460 PA3619_tr translation of PA3619 335 99.10 99.10 0 1746.0
106093 gb|AAG07007.1|AE004782_5 (AE004782) hypothetical protein PA3619 [Pseudomonas aeruginosa PAO1] 335 99.10 99.10 0 1746.0
106094 emb|CAD17430.1| (AL646077) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum] 482 27.80 40.24 154 608.0
GC ORFID: 44991How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3619Glimmer Score:
Start: 3449320Stop: 3450327
Length: 1008
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3619 translation of PA3619Homolog Bit Score 677.0
Other Homologs: t_PA3619 (ORF: GLIMMER)
GC ORF Sequence
ATGAACATCGCGCCACTCAAGGTCTCTCTGCTCTCCCTCGCCCTGCTCCTCTCCCCCGTAGCCAGCCTCCCC
GCCCATGCGGCCTGCACCGCCAACCTGGCCCTGCAACCCGCCAGCAGCCTGCCCGCGCTCGGCGGGCGCCTG
GTCTACCACAGCTATATGGAGTACGGGGACGGCTCCTCGAACCTCTACCTGCACGATTTCAAGAGCAAGAGC
ACCCGCCAGCTCAACCAGCCCGGCTGGAACATCGAGGACCCGATGAATGCGCATTTCTCCCCGGACGGCCGC
TACCTGACCTTCATGGGCCGCCAGAATGGCGCCTGGCACGTGTTCGCCTGGGCCATCGGCGGTACCCAGGCG
CCGAGCAACCTGACCGCGGCCATCGGCGGTCGCAACGAGGACCCGAAGTTCTCCTTCGATGGCCGCCAGGTC
GTGCTCAAGCACGAGGGCGACATCCGCCTCGCCACCCTGGTCTTCAATGGCGATGGCAGCGTCGGCGTGAGC
GCCTGGAAAGCCGTGACCAGCGACGGCTGGAGCACCGAGGAGTCGATGCCGTTCCTCACCCCCTCAGGCAAG
TACGTGGTCTACGCGACAGGAGCCGGCGACAGCCTGCGGGTGGTGCGCAGGAACCTGGAGAACGGCCAGGTC
AGCCCCCTCGCCACCCCGGCCGCGGGGGGCCGCGACTATTACCCGGTGGTACGCGACTACACCGCCTACTTC
CTCTCGCGTACCCAGCCGGCCGGCAACGACCAGTTGGCCATGGTCGTACCCAACAGCCCGCCCGGCACCCCG
GCGATCCTGCCGCTCAACCACTGCCAGGGCGACAATTCCGATGCCGCGCCGGTGAACGAGGACTACCTGATC
TTCTCCAGCACTTCGTTCGACCCGACCTACAGCCTGCTCCTCGGTGACATCGCCGCGGCGCGGGTCTGGCGT
CTCGACCCGGCGCAGATCAACCTGCCCGACGGTCGGCAGAAGCTCGGCGCCAGCTATACCGCGGCACGCTGA