ViewGene
Locus Name:
GeneID:
Location:

GeneID:1988
TrivialName: PA14_47210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47210
PAO1 Ortholog Locus:PA1317
Sequence Length:996
Protein Length:331
Start: 4206553
Stop: 4205558
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04706.1|AE004561_2 (AE004561) cytochrome o ubiquinol oxidase subunit II [Pseudomonas aeruginosa PAO1]
Identities = 330/331 (99%), Positives = 330/331 (99%)
Sequence:
ATGACCAAAGCAAACCCGTTTGCCGCATTGAAATGGCTTTCCCTGGCGCCCGCGCTGCTGCTCGGCGGCTGC
GACATGACCCTGTTCAACCCGAAAGGGCAGGTGGGCATGGACGAGCGCACCCTGATCATTACCGCGACCCTG
CTGATGCTGATCGTGGTCATCCCGGTGATCGTGATGACCCTGGCGTTCGCCTGGAAGTACCGCGCCTCGAAC
ACCCAGGCCGAGTACAAGCCGGACTGGCACCACTCCAACCGCATCGAGGCGGTGGTCTGGCTGGTGCCCTGC
GTGATCATCGCGATCCTCGGCTGGATCACCTGGGAAAGCACCCACAAGCTCGACCCATACCGTCCGCTGGAC
TCCGAGGTCAAGCCGGTCACCATCCAGGCCGTTTCGCTGGACTGGAAGTGGTTGTTCATCTACCCGGAGCAG
GGTATCGCCACGGTCAACGAGATCGCCTTCCCGAAAGACACCCCGGTGAATTTCCAGATCACCTCGGATTCG
GTGATGAACTCGTTCTTCATCCCGCAGCTGGGCAGCCAGATCTACTCGATGGCCGGGATGATGACCAAGCTG
CACCTGATCGCCAACGAAGAAGGCGTGTTCGACGGTATCTCCGCGAACTACAGCGGCGGCGGTTTCTCCGGC
ATGCGCTTCAAGGCCATCGCCACCTCCGAGCAGGGCTTCCAGGACTGGGTCGCCAAGGTCAAGGCTGCACCG
ACCAGCCTGTCGATCGGCACCTATCCGGAGCTGGTCAAGCCGAGCGAGAACGTTCCGCCGACCTACTTCTCT
TCGGTCAGCCCGGAACTGTTCGGCCACATCCTCACCAAGTACGAGCACCACGGCGACGCCAAGGGTGCCGCG
CACGGCGAGCACGCCGGGGCTGAGCACGAAGCCGCCATGACCGGTCACGACATGCAGGACATGGACATGCAA
GCCATGCAGGGCATGAAAGACATGAAGGACATGCACATGCAACCGAGTACCCAGGAGTAA
Translation:
MTKANPFAALKWLSLAPALLLGGCDMTLFNPKGQVGMDERTLIITATLLMLIVVIPVIVMTLAFAWKYRASN
TQAEYKPDWHHSNRIEAVVWLVPCVIIAILGWITWESTHKLDPYRPLDSEVKPVTIQAVSLDWKWLFIYPEQ
GIATVNEIAFPKDTPVNFQITSDSVMNSFFIPQLGSQIYSMAGMMTKLHLIANEEGVFDGISANYSGGGFSG
MRFKAIATSEQGFQDWVAKVKAAPTSLSIGTYPELVKPSENVPPTYFSSVSPELFGHILTKYEHHGDAKGAA
HGEHAGAEHEAAMTGHDMQDMDMQAMQGMKDMKDMHMQPSTQE*
AnnotationID:1997GeneID:1988
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 09:09:40
Gene Name:cyoA
Confidence Code:2
GeneProduct:cytochrome o ubiquinol oxidase subunit II
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome o oxidase A
Functional Category Confidence Code:5
COGs:COG1622
Secondary Functional Category(ies):
EC Number:1.10.3.-
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA76356.1| (AB016787) cytochrome o ubiquinol oxidase A [Pseudomonas putida]
          Length = 314

 Score =  372 bits (954), Expect = e-102
 Identities = 184/297 (61%), Positives = 222/297 (74%), Gaps = 5/297 (1%)

>gb|AAO54847.1| (AE016860) cytochrome o ubiquinol oxidase, subunit II [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 313

 Score =  370 bits (949), Expect = e-102
 Identities = 182/293 (62%), Positives = 221/293 (75%), Gaps = 1/293 (0%)

>gb|AAC73535.1| (AE000149) cytochrome o ubiquinol oxidase subunit II [Escherichia
           coli K12]
          Length = 315

 Score =  354 bits (908), Expect = 5e-97
 Identities = 174/301 (57%), Positives = 225/301 (74%), Gaps = 4/301 (1%)






 
Structural Features:
COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 
[Energy production and conversion]
CD-Length = 247 residues, 100.0% aligned
Score =  274 bits (702), Expect = 1e-74
Identities = 128/255 (50%), Positives = 168/255 (65%), Gaps = 8/255 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37469




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1988_cdd.html


    		




 
URL:

















    ReferenceID:38017




  
Author/Investigator(s):
        Chepuri V, Lemieux L, Au DC, Gennis RB.





  
Title:
        The sequence of the cyo operon indicates substantial structural similarities between the cytochrome o ubiquinol oxidase of Escherichia coli and the aa3-type family of cytochrome c oxidases.




  
PubMed:
        2162835


MedLine:
        




    
Source:
J Biol Chem. 1990 Jul 5;265(19):11185-92.






    
Reference Type:Journal 







    
Data:


    		




 
URL:The sequence of the cyo operon indicates substantial structural similarities between the cytochrome o ubiquinol oxidase of Escherichia coli and the aa3-type family of cytochrome c oxidases.









           
Homologs By Global Alignment 

           

       



     
Gene ID:1988
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3459
                           PA1317_tr
                           translation of PA1317
                           331
                           99.69
                           99.69
                           0
                           1748.0
     

     
     
106041
                           gb|AAG04706.1|AE004561_2
                           (AE004561) cytochrome o ubiquinol oxidase subunit II [Pseudomonas aeruginosa PAO1]
                           331
                           99.69
                           99.69
                           0
                           1748.0
     

     
     
106042
                           gb|AAN66437.1|AE016273_6
                           (AE016777) cytochrome o ubiquinol oxidase, subunit II [Pseudomonas putida KT2440]
                           334
                           57.48
                           70.05
                           24
                           974.0
     

     
     
106043
                           dbj|BAB83593.1|
                           (AB066295) cytochrome o oxidase A [Pseudomonas putida]
                           334
                           57.48
                           70.05
                           24
                           974.0
     

     
     
106045
                           dbj|BAA76356.1|
                           (AB016787) cytochrome o ubiquinol oxidase A [Pseudomonas putida]
                           334
                           56.58
                           68.86
                           23
                           959.0
     

     






      

          
GC ORFID: 44990How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1317Glimmer Score: 

          
Start: 747356Stop: 748351

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1317 translation of PA1317Homolog Bit Score 677.0

          
Other Homologs:  t_PA1317 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAAAGCAAACCCGTTTGCCGCATTGAAATGGCTTTCCCTGGCGCCCGCGCTGCTGCTCGGCGGCTGC 
GACATGACCCTGTTCAACCCGAAAGGGCAGGTGGGCATGGACGAGCGCACCCTGATCATTACCGCGACCCTG 
CTGATGCTGATCGTGGTCATCCCGGTGATCGTGATGACCCTGGCGTTCGCCTGGAAGTACCGCGCCTCGAAC 
ACCCAGGCCGAGTACAAGCCGGACTGGCACCACTCCAACCGCATCGAGGCGGTGGTCTGGCTGGTGCCCTGC 
GTGATCATCGCGATCCTCGGCTGGATCACCTGGGAAAGCACCCACAAGCTCGACCCATACCGTCCGCTGGAC 
TCCGAGGTCAAGCCGGTCACCATCCAGGCCGTTTCGCTGGACTGGAAGTGGTTGTTCATCTACCCGGAGCAG 
GGTATCGCCACGGTCAACGAGATCGCCTTCCCGAAAGACACCCCGGTGAATTTCCAGATCACCTCGGATTCG 
GTGATGAACTCGTTCTTCATCCCGCAGCTGGGCAGCCAGATCTACTCGATGGCCGGGATGATGACCAAGCTG 
CACCTGATCGCCAACGAAGAAGGCGTGTTCGACGGTATCTCCGCGAACTACAGCGGCGGCGGTTTCTCCGGC 
ATGCGCTTCAAGGCCATCGCCACCTCCGAGCAGGGCTTCCAGGACTGGGTCGCCAAGGTCAAGGCTGCACCG 
ACCAGCCTGTCGATCGGCACCTATCCGGAGCTGGTCAAGCCGAGCGAGAACGTTCCGCCGACCTACTTCTCT 
TCGGTCAGCCCGGAACTGTTCGGCCACATCCTCACCAAGTACGAGCACCACGGCGACGCCAAGGGTGCCGCG 
CACGGCGAGCACGCCGGGGCTGAGCACGAAGCCGCCATGACCGGTCACGACATGCAGGACATGGACATGCAA 
GCCATGCAGGGCATGAAAGACATGAAGGACATGCACATGCAACCGAGTACCCAGGAGTAA