ViewGene
Locus Name:
GeneID:
Location:

GeneID:1987
TrivialName: PA14_67110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67110
PAO1 Ortholog Locus:PA5080
Sequence Length:972
Protein Length:323
Start: 5991671
Stop: 5990700
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08465.1|AE004921_2 (AE004921) prolyl aminopeptidase [Pseudomonas aeruginosa PAO1]
Identities = 323/323 (100%), Positives = 323/323 (100%)
Sequence:
ATGCTAGTTCTGTATCCGGAAATTAAACCCTACGCTCGCCACGAGCTGGCCGTCGACGAACCGCATGTGCTG
TATGCCGACGAAAGCGGTTCGCCGGACGGACTGCCGGTCGTCTTCGTCCACGGCGGCCCCGGCTCCGGTTGC
GATGCCCTGTCGCGTCGCTTCTTCGATCCCAACCTCTACCGTATCGTCACCTTCGACCAGCGCGGTTGCGGC
CGTTCCACGCCCCACGCCAGCCTGGAGAAGAACAGCACCTGGGAGCTGGTGGCGGACATGGAGCGCCTGCGC
GAGCACCTGGGTATCGAGAAGTGGGTGCTGTTCGGCGGTTCCTGGGGCTCGACCCTGTCGCTGGCCTACGCG
CAGACCCATCCCGAGCGGGTCCATGCGCTGATCCTGCGCGGCATCTTCCTCTGCCGTCCGCAGGACATCCAC
TGGTTCTACCAGGAAGGCGCCAGCCGCCTGTTCCCCGACTATTGGGAAGACTATGTCGCGCCGATCCCGCCG
GAAGAGCGCGGCGACCTGCTGGCGGCCTTCCACAAGCGCCTGACCGGTAGCGACCAGATCGCCCAGATGCAC
GCCGCCAAGGCCTGGTCGACCTGGGAGGGCCGCACCGCCACGCTGCGCCCCAACCCCATGGTGGTGGACCGC
TTCACCGAGCCGGGCAGGGCGCTGTCGATCTCGCGCATCGAGAACCACTTCTTCGTCAACCAGGGCTTCCTC
AGGCCCAACCAGTTGCTCGAGGACATGCACCGCATCGCCCATCTGCCTGGCGTGATCGTGCATGGCCGCTAC
GACGCCATCTGTCCGCTGGACAATGCCTGGGCCCTGCACCAGGCCTGGCCGAACAGCGAACTGCAGATCATC
CGCGACGCCGGGCATACCGCCAGCGAGCCGGGGATAGTCGATGCGCTGGTGCGCGCCACCAACGAGATCGGC
CGGCGACTGCTCGACCTGCCGCCGGAGGCCGAATGA
Translation:
MLVLYPEIKPYARHELAVDEPHVLYADESGSPDGLPVVFVHGGPGSGCDALSRRFFDPNLYRIVTFDQRGCG
RSTPHASLEKNSTWELVADMERLREHLGIEKWVLFGGSWGSTLSLAYAQTHPERVHALILRGIFLCRPQDIH
WFYQEGASRLFPDYWEDYVAPIPPEERGDLLAAFHKRLTGSDQIAQMHAAKAWSTWEGRTATLRPNPMVVDR
FTEPGRALSISRIENHFFVNQGFLRPNQLLEDMHRIAHLPGVIVHGRYDAICPLDNAWALHQAWPNSELQII
RDAGHTASEPGIVDALVRATNEIGRRLLDLPPEAE*
AnnotationID:1996GeneID:1987
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:12
Gene Name:
Confidence Code:2
GeneProduct:prolyl aminopeptidase
Cell Localization:()
Synonyms:PA5080, pap, pip
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:proline iminopeptidase
Functional Category Confidence Code:5
COGs:pfam00561,COG0596
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70593.1|AE016702_2 (AE016792) proline iminopeptidase [Pseudomonas putida KT2440]
          Length = 323

 Score =  577 bits (1486), Expect = e-164
 Identities = 262/321 (81%), Positives = 294/321 (91%)

>gb|AAO58590.1| (AE016874) proline iminopeptidase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 323

 Score =  552 bits (1422), Expect = e-156
 Identities = 254/321 (79%), Positives = 288/321 (89%)

>gb|AAM35797.1| (AE011722) proline imino-peptidase, chain A [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 313

 Score =  397 bits (1019), Expect = e-110
 Identities = 188/310 (60%), Positives = 231/310 (74%), Gaps = 1/310 (0%)








 
Structural Features:
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. 
CD-Length = 224 residues,  94.6% aligned
Score =  102 bits (255), Expect = 5e-23
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 25/237 (10%)

COG0596, MhpC, Predicted hydrolases or acyltransferases 
(alpha/beta hydrolase superfamily)
CD-Length = 282 residues,  98.2% aligned
Score = 90.9 bits (223), Expect = 2e-19
Identities = 74/300 (24%), Positives = 99/300 (33%), Gaps = 29/300 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3977




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34991




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1987_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1987
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3458
                           PA5080_tr
                           translation of PA5080
                           323
                           99.99
                           99.99
                           0
                           1749.0
     

     
     
105971
                           gb|AAG08465.1|AE004921_2
                           (AE004921) prolyl aminopeptidase [Pseudomonas aeruginosa PAO1]
                           323
                           99.99
                           99.99
                           0
                           1749.0
     

     
     
105972
                           gb|AAN70593.1|AE016702_2
                           (AE016792) proline iminopeptidase [Pseudomonas putida KT2440]
                           323
                           81.11
                           91.02
                           0
                           1484.0
     

     
     
105973
                           gb|AAO58590.1|
                           (AE016874) proline iminopeptidase [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           78.63
                           89.16
                           0
                           1420.0
     

     
     
105974
                           gb|AAM35797.1|
                           (AE011722) proline imino-peptidase, chain A [Xanthomonas axonopodis pv. citri str. 306]
                           324
                           58.02
                           71.29
                           12
                           1019.0
     

     






      

          
GC ORFID: 44989How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5080Glimmer Score: 

          
Start: 5255356Stop: 5254385

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5080 translation of PA5080Homolog Bit Score 678.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3271 (ORF: BLASTX 553.0), t_PA5080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGTTCTGTATCCGGAAATTAAACCCTACGCTCGCCACGAGCTGGCCGTCGACGAACCGCATGTGCTG 
TATGCCGACGAAAGCGGTTCGCCGGACGGACTGCCGGTCGTCTTCGTCCACGGCGGCCCCGGCTCCGGTTGC 
GATGCCCTGTCGCGTCGCTTCTTCGATCCCAACCTCTACCGTATCGTCACCTTCGACCAGCGCGGTTGCGGC 
CGTTCCACGCCCCACGCCAGCCTGGAGAAGAACAGCACCTGGGAGCTGGTGGCGGACATGGAGCGCCTGCGC 
GAGCACCTGGGTATCGAGAAGTGGGTGCTGTTCGGCGGTTCCTGGGGCTCGACCCTGTCGCTGGCCTACGCG 
CAGACCCATCCCGAGCGGGTCCATGCGCTGATCCTGCGCGGCATCTTCCTCTGCCGTCCGCAGGACATCCAC 
TGGTTCTACCAGGAAGGCGCCAGCCGCCTGTTCCCCGACTATTGGGAAGACTATGTCGCGCCGATCCCGCCG 
GAAGAGCGCGGCGACCTGCTGGCGGCCTTCCACAAGCGCCTGACCGGTAGCGACCAGATCGCCCAGATGCAC 
GCCGCCAAGGCCTGGTCGACCTGGGAGGGCCGCACCGCCACGCTGCGCCCCAACCCCATGGTGGTGGACCGC 
TTCACCGAGCCGGGCAGGGCGCTGTCGATCTCGCGCATCGAGAACCACTTCTTCGTCAACCAGGGCTTCCTC 
AGGCCCAACCAGTTGCTCGAGGACATGCACCGCATCGCCCATCTGCCTGGCGTGATCGTGCATGGCCGCTAC 
GACGCCATCTGTCCGCTGGACAATGCCTGGGCCCTGCACCAGGCCTGGCCGAACAGCGAACTGCAGATCATC 
CGCGACGCCGGGCATACCGCCAGCGAGCCGGGGATAGTCGATGCGCTGGTGCGCGCCACCAACGAGATCGGC 
CGGCGACTGCTCGACCTGCCGCCGGAGGCCGAATGA