ViewGene

Locus Name:
GeneID:
Location:

GeneID:1985
TrivialName: PA14_29820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29820
PAO1 Ortholog Locus:PA2651
Sequence Length:1059
Protein Length:352
Start: 2581991
Stop: 2583049
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06039.1|AE004694_2 (AE004694) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 351/352 (99%), Positives = 352/352 (100%)
Sequence:
ATGCTCGACACGAAACTGGAATCCCGGACTTTTCTCCTGTTGCTGGCGGTGGTCACGCTCGCCTTCGGCTGG
CTCTTGCTGCCGTTCTACGGCGCGGTGTTCTGGGGCACCATCCTGGCGATCATCTTCGCCCCGGTGCAACGC
CGCCTGCAGGTGCGTCTGAGGGATCGGAAGAACCTCGCCGCGCTGATCACCCTGCTGATCTGCGTGCTGATC
GTGATCATCCCGGTGATCTTCATCGCCGGTTCGCTGGTGCAGGAAGGCGCGAGCGTCTACCAGCGGGTCAAG
TCCGGCGAACTGAACTTCGCCGCCTACCTGCAGCAGGCGGTGGCCGCCTTGCCGCCATCGGTGCACCAGTGG
CTGGAGCGCTTCGACCTGGCCAATCTCTCGAGCCTGCAGGAGAAGCTCTCCTCGGTGGCGATGCAGGCCAGC
CAGGTGGTGGCGACCAAGGCGTTCAGCATCGGCCAGAACACCCTCGACTTCGTCATCAGCTTCGGCATCATG
CTCTACCTGCTGTTCTTCCTCCTTCGCGACGGTCGCGTGCTCGGCCGGCGGATCAAGCAGGCGGTGCCGCTG
AGCCAGGAACACAAGCACCACCTGTTCGCCAAGTTCACCACGGTGATCCGCGCCACGGTGAAGGGCAACATC
GCCGTGGCTGCCACCCAGGGCGCTCTCGGCGGCCTGATCTTCTGGGTGCTGGGCATCGAGGGCGCCTTGCTC
TGGGGCACCCTGATGGCCTTCCTGTCGCTGCTGCCGGCCATCGGCGCGGCGCTGATCTGGGCGCCGGTGGCG
GCCTATTTCCTGCTCACCGGGGCGATCTGGCAGGGCGTAGTGCTGATCCTGTTCTGCGTGGTGGTGATCGGC
CTGGTGGACAACATCCTGCGCCCGATCCTGGTCGGCAAGGACACCAAGATGCCGGACTACGTGGTGCTGATC
TCCACCCTCGGCGGTATGGCCTTGTTCGGCCTCAACGGCTTCGTCATCGGCCCGCTGATCGCCGCGCTGTTC
ATGGCCAGTTGGGACCTGTTCACTGGTCGCGAGGAAGAACCACAGGCCTGA
Translation:
MLDTKLESRTFLLLLAVVTLAFGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLI
VIIPVIFIAGSLVQEGASVYQRVKSGELNFAAYLQQAVAALPPSVHQWLERFDLANLSSLQEKLSSVAMQAS
QVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVPLSQEHKHHLFAKFTTVIRATVKGNI
AVAATQGALGGLIFWVLGIEGALLWGTLMAFLSLLPAIGAALIWAPVAAYFLLTGAIWQGVVLILFCVVVIG
LVDNILRPILVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWDLFTGREEEPQA*
AnnotationID:1994GeneID:1985
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:48
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:PA2651
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG0628
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE32455.1| (BX640443) putative exported protein [Bordetella bronchiseptica]
          Length = 358

 Score =  518 bits (1333), Expect = e-146
 Identities = 259/337 (76%), Positives = 298/337 (88%)

>gb|AAO56856.1| (AE016868) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 354

 Score =  433 bits (1113), Expect = e-121
 Identities = 213/348 (61%), Positives = 272/348 (78%)

>gb|AAL54048.1| (AE009714) PUTATIVE TRANSMEMBRANE PROTEIN [Brucella melitensis 16M]
          Length = 352

 Score =  402 bits (1032), Expect = e-111
 Identities = 187/344 (54%), Positives = 259/344 (75%)

Structural Features:
COG0628, PerM, Predicted permease 
CD-Length = 355 residues,  95.8% aligned
Score =  136 bits (345), Expect = 3e-33
Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 12/351 (3%)
Genomic Context:
Comment:
ReferenceID:3973
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21119
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33188
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1985_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1985

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3456 PA2651_tr translation of PA2651 352 99.71 99.99 0 1750.0
105926 gb|AAG06039.1|AE004694_2 (AE004694) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 352 99.71 99.99 0 1750.0
105927 emb|CAE32455.1| (BX640443) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 358 72.90 84.63 6 1325.0
105928 emb|CAE43157.1| (BX640419) putative exported protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 358 72.90 84.63 6 1325.0
105929 emb|CAE37807.1| (BX640430) putative exported protein [Bordetella parapertussis] 358 72.62 84.35 6 1321.0
GC ORFID: 44987How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2651Glimmer Score:
Start: 2371935Stop: 2370877
Length: 1059
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2651 translation of PA2651Homolog Bit Score 678.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2791 (ORF: BLASTX 436.0), t_PA2651 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCGACACGAAACTGGAATCCCGGACTTTTCTCCTGTTGCTGGCGGTGGTCACGCTCGCCTTCGGCTGG
CTCTTGCTGCCGTTCTACGGCGCGGTGTTCTGGGGCACCATCCTGGCGATCATCTTCGCCCCGGTGCAACGC
CGCCTGCAGGTGCGTCTGAGGGATCGGAAGAACCTCGCCGCGCTGATCACCCTGCTGATCTGCGTGCTGATC
GTGATCATCCCGGTGATCTTCATCGCCGGTTCGCTGGTGCAGGAAGGCGCGAGCGTCTACCAGCGGGTCAAG
TCCGGCGAACTGAACTTCGCCGCCTACCTGCAGCAGGCGGTGGCCGCCTTGCCGCCATCGGTGCACCAGTGG
CTGGAGCGCTTCGACCTGGCCAATCTCTCGAGCCTGCAGGAGAAGCTCTCCTCGGTGGCGATGCAGGCCAGC
CAGGTGGTGGCGACCAAGGCGTTCAGCATCGGCCAGAACACCCTCGACTTCGTCATCAGCTTCGGCATCATG
CTCTACCTGCTGTTCTTCCTCCTTCGCGACGGTCGCGTGCTCGGCCGGCGGATCAAGCAGGCGGTGCCGCTG
AGCCAGGAACACAAGCACCACCTGTTCGCCAAGTTCACCACGGTGATCCGCGCCACGGTGAAGGGCAACATC
GCCGTGGCTGCCACCCAGGGCGCTCTCGGCGGCCTGATCTTCTGGGTGCTGGGCATCGAGGGCGCCTTGCTC
TGGGGCACCCTGATGGCCTTCCTGTCGCTGCTGCCGGCCATCGGCGCGGCGCTGATCTGGGCGCCGGTGGCG
GCCTATTTCCTGCTCACCGGGGCGATCTGGCAGGGCGTAGTGCTGATCCTGTTCTGCGTGGTGGTGATCGGC
CTGGTGGACAACATCCTGCGCCCGATCCTGGTCGGCAAGGACACCAAGATGCCGGACTACGTGGTGCTGATC
TCCACCCTCGGCGGTATGGCCTTGTTCGGCCTCAACGGCTTCGTCATCGGCCCGCTGATCGCCGCGCTGTTC
ATGGCCAGTTGGGACCTGTTCACTGGTCGCGAGGAAGAACCACAGGCCTGA