ViewGene

Locus Name:
GeneID:
Location:

GeneID:1984
TrivialName: PA14_32110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32110
PAO1 Ortholog Locus:PA2516
Sequence Length:1014
Protein Length:337
Start: 2793178
Stop: 2794191
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05904.1|AE004678_10 (AE004678) toluate 1,2-dioxygenase electron transfer component [Pseudomonas aeruginosa PAO1]
Identities = 337/337 (100%), Positives = 337/337 (100%)
Sequence:
ATGAACCATCGGATCGCACTCAACTTCGAAGACGGGGTGACCCGCTTCATCCATGCCGCGCCCGGCGAGACC
GTGGCCGACGCGGCCTACCGCCAGGGCATCAACATCCCCCTGGACTGCCGCGACGGCGCCTGCGGCACCTGC
AAGTGCCTGGCCGAGGCCGGGCGCTATGCGCTGGGCCAGGACTACATCGACGATGCCCTCAGCGCCGAGGAA
GCCGCCCGCGGCTACGTGCTGACCTGCCAGATGCGCGCCGAAAGCGACTGCGTGCTGCGCGTGCCGGCGTCC
TCGACCCTGTGCAGGACCGGCCAGGCGCGCTACGAGGCGCGCATCAGCGAAGTCCGGCAACTGTCGCCGAGC
ACCATCGGCCTGTCGCTGCGCGGCGAGGCGCTGGCCAGCCTGGCGTTCCTGCCCGGGCAGTACGTCAACCTC
CAGGTGCCCGGCAGCGAGCAGCGCCGCGCCTACTCCTTCAGCTCGCTGGCGAAGGACGGCGAGGTCAGCTTC
CTGATCCGCAACGTCCCCGGCGGGCTGATGAGCGGCTTCCTCAGTGGCACGGCCAGGGCCGGCGACAGCCTG
GCGATGGACGGCCCGCTGGGCAGTTTCTACCTGCGCGAGATTCACCGGCCACTGCTGATGCTGGCCGGCGGC
ACCGGCCTGGCGCCGTTCACCGCGATGCTCGAACGGATCGCCGAGCAGGGCAGCGCGCACCCGCTGCACCTG
GTCTACGGGGTGACCCACGACGTCGACCTGGTCGGGCTCGAGCGCCTGGAGGCGTTCGCCGAACGGATTCCC
GGCTTCACCTGGAGCGCCTGCGTGGCCAGCGCCGACAGCGACTATCCGCGCAAGGGCTACGTGACCGAGCAC
ATCGCCGCGCAGCACCTGCACGAGGGCGACGTCGACATCTACCTGTGCGGGCCGCCGCCGATGGTCGAGGCG
GTCGAGCGCTACCTGCGCGAGCAGGGCGTGCGCCCGGCGAATTTCTACTACGAAAAGTTCGCCGCCAGCGCG
GCCTGA
Translation:
MNHRIALNFEDGVTRFIHAAPGETVADAAYRQGINIPLDCRDGACGTCKCLAEAGRYALGQDYIDDALSAEE
AARGYVLTCQMRAESDCVLRVPASSTLCRTGQARYEARISEVRQLSPSTIGLSLRGEALASLAFLPGQYVNL
QVPGSEQRRAYSFSSLAKDGEVSFLIRNVPGGLMSGFLSGTARAGDSLAMDGPLGSFYLREIHRPLLMLAGG
TGLAPFTAMLERIAEQGSAHPLHLVYGVTHDVDLVGLERLEAFAERIPGFTWSACVASADSDYPRKGYVTEH
IAAQHLHEGDVDIYLCGPPPMVEAVERYLREQGVRPANFYYEKFAASAA*
AnnotationID:1993GeneID:1984
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 09:09:12
Gene Name:xylZ
Confidence Code:2
GeneProduct:toluate 1,2-dioxygenase electron transfer component
Cell Localization:()
Synonyms:benC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:benzoate dioxygenase, ferredoxin reductase component
Functional Category Confidence Code:5
COGs:COG0543,COG1018
Secondary Functional Category(ies):central intermediary metabolism
EC Number:1.18.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAK52289.1| (AY026914) benzoate 1,2-dioxygenase reductase BenC [Pseudomonas
           putida]
          Length = 337

 Score =  674 bits (1739), Expect = 0.0
 Identities = 335/337 (99%), Positives = 335/337 (99%)

>dbj|BAB21465.1| (AB024746) electron transfer component of chlorobenzoate
           1,2-dioxygenase [Burkholderia sp. NK8]
          Length = 342

 Score =  394 bits (1012), Expect = e-109
 Identities = 188/337 (55%), Positives = 253/337 (75%), Gaps = 2/337 (0%)

>gb|AAK58905.1|AF279141_3 (AF279141) benzoate dioxygenase reductase [Rhodococcus sp. 19070]
          Length = 536

 Score =  376 bits (966), Expect = e-104
 Identities = 183/336 (54%), Positives = 244/336 (72%), Gaps = 1/336 (0%)
Structural Features:
COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 
[Coenzyme metabolism / Energy production and conversion]
CD-Length = 252 residues,  83.7% aligned
Score =  173 bits (440), Expect = 2e-44
Identities = 83/220 (37%), Positives = 124/220 (56%), Gaps = 11/220 (5%)

COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
[Energy production and conversion]
CD-Length = 266 residues,  87.6% aligned
Score =  132 bits (334), Expect = 5e-32
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 9/238 (3%)

Genomic Context:
Comment:
ReferenceID:3971
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21117
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33073
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1984_cdd.html
URL:
ReferenceID:34513
Author/Investigator(s): Neidle EL, Hartnett C, Ornston LN, Bairoch A, Rekik M, Harayama S.
Title: Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases.
PubMed: 1885518
MedLine:
Source:
J Bacteriol. 1991 Sep;173(17):5385-95.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1885518
Homologs By Global Alignment
Gene ID:1984

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3454 PA2516_tr translation of PA2516 337 99.99 99.99 0 1750.0
105903 gb|AAG05904.1|AE004678_10 (AE004678) toluate 1,2-dioxygenase electron transfer component [Pseudomonas aeruginosa PAO1] 337 99.99 99.99 0 1750.0
105904 gb|AAK52289.1| (AY026914) benzoate 1,2-dioxygenase reductase BenC [Pseudomonas putida] 337 99.40 99.40 0 1739.0
105905 gb|AAN68771.1|AE016509_4 (AE016785) benzoate dioxygenase, ferredoxin reductase component [Pseudomonas putida KT2440] 337 76.85 88.72 1 1381.0
105906 gb|AAF63450.1|AF218267_7 (AF218267) benzoate dioxygenase - ferredoxin reductase [Pseudomonas putida] 337 76.26 88.42 1 1372.0
GC ORFID: 44986How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2516Glimmer Score:
Start: 2160746Stop: 2159733
Length: 1014
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2516 translation of PA2516Homolog Bit Score 678.0
Other Homologs: t_PA2514 (ORF: BLASTX 301.0), t_PA2516 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCATCGGATCGCACTCAACTTCGAAGACGGGGTGACCCGCTTCATCCATGCCGCGCCCGGCGAGACC
GTGGCCGACGCGGCCTACCGCCAGGGCATCAACATCCCCCTGGACTGCCGCGACGGCGCCTGCGGCACCTGC
AAGTGCCTGGCCGAGGCCGGGCGCTATGCGCTGGGCCAGGACTACATCGACGATGCCCTCAGCGCCGAGGAA
GCCGCCCGCGGCTACGTGCTGACCTGCCAGATGCGCGCCGAAAGCGACTGCGTGCTGCGCGTGCCGGCGTCC
TCGACCCTGTGCAGGACCGGCCAGGCGCGCTACGAGGCGCGCATCAGCGAAGTCCGGCAACTGTCGCCGAGC
ACCATCGGCCTGTCGCTGCGCGGCGAGGCGCTGGCCAGCCTGGCGTTCCTGCCCGGGCAGTACGTCAACCTC
CAGGTGCCCGGCAGCGAGCAGCGCCGCGCCTACTCCTTCAGCTCGCTGGCGAAGGACGGCGAGGTCAGCTTC
CTGATCCGCAACGTCCCCGGCGGGCTGATGAGCGGCTTCCTCAGTGGCACGGCCAGGGCCGGCGACAGCCTG
GCGATGGACGGCCCGCTGGGCAGTTTCTACCTGCGCGAGATTCACCGGCCACTGCTGATGCTGGCCGGCGGC
ACCGGCCTGGCGCCGTTCACCGCGATGCTCGAACGGATCGCCGAGCAGGGCAGCGCGCACCCGCTGCACCTG
GTCTACGGGGTGACCCACGACGTCGACCTGGTCGGGCTCGAGCGCCTGGAGGCGTTCGCCGAACGGATTCCC
GGCTTCACCTGGAGCGCCTGCGTGGCCAGCGCCGACAGCGACTATCCGCGCAAGGGCTACGTGACCGAGCAC
ATCGCCGCGCAGCACCTGCACGAGGGCGACGTCGACATCTACCTGTGCGGGCCGCCGCCGATGGTCGAGGCG
GTCGAGCGCTACCTGCGCGAGCAGGGCGTGCGCCCGGCGAATTTCTACTACGAAAAGTTCGCCGCCAGCGCG
GCCTGA