ViewGene
Locus Name:
GeneID:
Location:

GeneID:1980
TrivialName: PA14_49090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49090
PAO1 Ortholog Locus:PA1186
Sequence Length:1020
Protein Length:339
Start: 4361397
Stop: 4360378
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04575.1|AE004549_2 (AE004549) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 336/339 (99%), Positives = 337/339 (99%)
Sequence:
ATGAGCGCCCTGCTGCAAGGCGCCTCGGCGCCGGCCTTCGTCGGGCACCCTGGCTATCGGCGCATGTTCGCC
GCAGACGCGCTGACCCTGGGCCTGTTCCTGCCGTTGCGTTTCTACCAGGGCGACATGCGGGTGCTGCTGGGC
CAGGCGCGGCTGGTCGAAGAAATCGATCGACTGGGATTCGCCGCCGTCTGGGTACGCGACGTACCGCTGTTC
GACCCACGCTTCGGCGATGCCGGACAAGTGTTCGACCCGTTCACCTACCTTGGCTATCTGGCCGCGCGGACC
CGCCGTATCGCCCTGGCCACCGGCAGCGCGGTGCTTGCCCTGCGCCAACCGGTCGACCTGGCCAAGGCCGCG
GCGAGCGTCGACCGGTTGTCCGGCGGACGCCTGGTGCTGGGCCTCGCCTCCGGCGACCGGCCGGTGGAGTTC
CCCGCCTACGGGTTGGAGCATGCGCAGCGCGGCGAGCGGTTCGCCCAGGGCCTGGACTACCTGCGCCAACTG
CTGCACGGCTGCCGGCACGTCGCCTCGCCGCTCGGTACGCTGGACGACGCCGAACTGTTGCCGCGTCCGCCG
GCCGGCGCCATCCCGCTGGTCGTCACCGGCTCCGCGCGGCAGCCGGCGGACTGGCTGGCACGCCAGGCGGAT
GGCTGGCTGACCTATCCGGAGTCGACTGTCGATGCGTCCGGACCACGTCGCCTGGCCGGGAAGATCCGCGCC
TGGAGGATGTCCATCGCGGACGGCGGGTTCCGCCCGCACATGACCAACGAATGGCTGGACCTGGTGGACGAC
CCGGCGTATCCGCGTACGTCGTTGCATGGCGGCTACGTCCTGCGCACCGGGCGCAACGGCCTGATCGAGCTG
CTCGGCGAATGGCGTGCGGCGGGCGTCAACCATGCCGCCCTGGGCATCCAGTTCTCCGCCAGGCCGGCAGCG
GAAGTCATCCAGGAACTGGCCGAGGAGGTGCTGCCGCTGTTCCCGTCCCACCCGGGCGTGCAGCCGGCGAGC
ATGGACTGGTAG
Translation:
MSALLQGASAPAFVGHPGYRRMFAADALTLGLFLPLRFYQGDMRVLLGQARLVEEIDRLGFAAVWVRDVPLF
DPRFGDAGQVFDPFTYLGYLAARTRRIALATGSAVLALRQPVDLAKAAASVDRLSGGRLVLGLASGDRPVEF
PAYGLEHAQRGERFAQGLDYLRQLLHGCRHVASPLGTLDDAELLPRPPAGAIPLVVTGSARQPADWLARQAD
GWLTYPESTVDASGPRRLAGKIRAWRMSIADGGFRPHMTNEWLDLVDDPAYPRTSLHGGYVLRTGRNGLIEL
LGEWRAAGVNHAALGIQFSARPAAEVIQELAEEVLPLFPSHPGVQPASMDW*
AnnotationID:1989GeneID:1980
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 15:03:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16978




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.







    
Reference Type:Blast (text/plain)







    
Data:PA1186_CDS.cgi


    		




 
URL:

















    ReferenceID:21109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1980
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3444
                           PA1186_tr
                           translation of PA1186
                           339
                           99.11
                           99.41
                           0
                           1752.0
     

     
     
105718
                           gb|AAG04575.1|AE004549_2
                           (AE004549) hypothetical protein PA1186 [Pseudomonas aeruginosa PAO1]
                           339
                           99.11
                           99.41
                           0
                           1752.0
     

     
     
105719
                           emb|CAE16633.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           343
                           45.18
                           62.68
                           28
                           806.0
     

     
     
105720
                           dbj|BAC22646.1|
                           (AB073151) alkanal monooxygenase alpha chain homolog [Comamonas sp. NCIMB 9872]
                           352
                           43.18
                           57.10
                           36
                           710.0
     

     
     
105721
                           gb|AAN68097.1|AE016441_9
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           347
                           42.93
                           60.80
                           28
                           700.0
     

     






      

          
GC ORFID: 44982How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1186Glimmer Score: 

          
Start: 592511Stop: 593530

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1186 translation of PA1186Homolog Bit Score 679.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1879 (ORF: BLASTX 223.0), t_PA1186 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCCTGCTGCAAGGCGCCTCGGCGCCGGCCTTCGTCGGGCACCCTGGCTATCGGCGCATGTTCGCC 
GCAGACGCGCTGACCCTGGGCCTGTTCCTGCCGTTGCGTTTCTACCAGGGCGACATGCGGGTGCTGCTGGGC 
CAGGCGCGGCTGGTCGAAGAAATCGATCGACTGGGATTCGCCGCCGTCTGGGTACGCGACGTACCGCTGTTC 
GACCCACGCTTCGGCGATGCCGGACAAGTGTTCGACCCGTTCACCTACCTTGGCTATCTGGCCGCGCGGACC 
CGCCGTATCGCCCTGGCCACCGGCAGCGCGGTGCTTGCCCTGCGCCAACCGGTCGACCTGGCCAAGGCCGCG 
GCGAGCGTCGACCGGTTGTCCGGCGGACGCCTGGTGCTGGGCCTCGCCTCCGGCGACCGGCCGGTGGAGTTC 
CCCGCCTACGGGTTGGAGCATGCGCAGCGCGGCGAGCGGTTCGCCCAGGGCCTGGACTACCTGCGCCAACTG 
CTGCACGGCTGCCGGCACGTCGCCTCGCCGCTCGGTACGCTGGACGACGCCGAACTGTTGCCGCGTCCGCCG 
GCCGGCGCCATCCCGCTGGTCGTCACCGGCTCCGCGCGGCAGCCGGCGGACTGGCTGGCACGCCAGGCGGAT 
GGCTGGCTGACCTATCCGGAGTCGACTGTCGATGCGTCCGGACCACGTCGCCTGGCCGGGAAGATCCGCGCC 
TGGAGGATGTCCATCGCGGACGGCGGGTTCCGCCCGCACATGACCAACGAATGGCTGGACCTGGTGGACGAC 
CCGGCGTATCCGCGTACGTCGTTGCATGGCGGCTACGTCCTGCGCACCGGGCGCAACGGCCTGATCGAGCTG 
CTCGGCGAATGGCGTGCGGCGGGCGTCAACCATGCCGCCCTGGGCATCCAGTTCTCCGCCAGGCCGGCAGCG 
GAAGTCATCCAGGAACTGGCCGAGGAGGTGCTGCCGCTGTTCCCGTCCCACCCGGGCGTGCAGCCGGCGAGC 
ATGGACTGGTAG